miRNA display CGI


Results 21 - 40 of 382 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14612 5' -59.7 NC_003521.1 + 173777 0.66 0.87558
Target:  5'- --aGGGucugcgcgauGGCCacgGACaCCGUCACUGCCu -3'
miRNA:   3'- ucaCCU----------UCGGg--CUGcGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 157949 0.66 0.87558
Target:  5'- cGUGGccugAGGCUgggcgacgaCGGCGCUGguagcgaCGCCGCCg -3'
miRNA:   3'- uCACC----UUCGG---------GCUGCGGCa------GUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 173696 0.66 0.87558
Target:  5'- uGUGc-GGCCCGcUGCUGUUGCUGCUg -3'
miRNA:   3'- uCACcuUCGGGCuGCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 193332 0.66 0.87558
Target:  5'- gGGUGGucGCCUu-CGUucccaUGUCGCCGCUc -3'
miRNA:   3'- -UCACCuuCGGGcuGCG-----GCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 36947 0.66 0.87558
Target:  5'- -aUGG--GCCCGACGCUgGUCGUCGCa -3'
miRNA:   3'- ucACCuuCGGGCUGCGG-CAGUGGCGg -5'
14612 5' -59.7 NC_003521.1 + 166787 0.66 0.87558
Target:  5'- cAG-GcGggGUCggaCGAUGCCGcCGCCGCUg -3'
miRNA:   3'- -UCaC-CuuCGG---GCUGCGGCaGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 240751 0.66 0.87558
Target:  5'- --cGGccGGCCCGcCGCaCGcCGCCGCg -3'
miRNA:   3'- ucaCCu-UCGGGCuGCG-GCaGUGGCGg -5'
14612 5' -59.7 NC_003521.1 + 53943 0.66 0.87558
Target:  5'- -cUGGAgacgcugagcuGGgCCGACgaGCCGUgcugcaCGCCGCCg -3'
miRNA:   3'- ucACCU-----------UCgGGCUG--CGGCA------GUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 165266 0.66 0.87558
Target:  5'- --aGGAgGGCgCUGGCGuaGcCGCCGCCg -3'
miRNA:   3'- ucaCCU-UCG-GGCUGCggCaGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 215443 0.66 0.874902
Target:  5'- -cUGGGAGCaggguguCCGGCGCCGaggaaccaagUCACacauaGCCu -3'
miRNA:   3'- ucACCUUCG-------GGCUGCGGC----------AGUGg----CGG- -5'
14612 5' -59.7 NC_003521.1 + 239900 0.66 0.874902
Target:  5'- uGGUGGuguuAGCCaUGaACGCCGUgCGCCagaugguGCCc -3'
miRNA:   3'- -UCACCu---UCGG-GC-UGCGGCA-GUGG-------CGG- -5'
14612 5' -59.7 NC_003521.1 + 39673 0.66 0.874902
Target:  5'- uGGUGGuguuAGCCaUGaACGCCGUgCGCCagaugguGCCc -3'
miRNA:   3'- -UCACCu---UCGG-GC-UGCGGCA-GUGG-------CGG- -5'
14612 5' -59.7 NC_003521.1 + 221747 0.66 0.874902
Target:  5'- aAGcGGAAcgacagcgucagcGUCUG-CGCCG-CGCCGCCg -3'
miRNA:   3'- -UCaCCUU-------------CGGGCuGCGGCaGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 121902 0.66 0.871482
Target:  5'- uGGcUGGGgcagauGGCCCGGC-CCGugggguugugcacguUCACCGUCa -3'
miRNA:   3'- -UC-ACCU------UCGGGCUGcGGC---------------AGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 98383 0.66 0.868712
Target:  5'- aAGUGGc-GCCCGAgGCuuCGgcggCGCUGCUg -3'
miRNA:   3'- -UCACCuuCGGGCUgCG--GCa---GUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 78679 0.66 0.868712
Target:  5'- cAGgGGAAGCC----GCCGUCugCGCUc -3'
miRNA:   3'- -UCaCCUUCGGgcugCGGCAGugGCGG- -5'
14612 5' -59.7 NC_003521.1 + 3967 0.66 0.868712
Target:  5'- aAGcGGAGGaCCCGGgGCacCGUCAgCGCg -3'
miRNA:   3'- -UCaCCUUC-GGGCUgCG--GCAGUgGCGg -5'
14612 5' -59.7 NC_003521.1 + 169534 0.66 0.868712
Target:  5'- uGGUGccccaGggGCCCG-UGCCG-CGgcccCCGCCu -3'
miRNA:   3'- -UCAC-----CuuCGGGCuGCGGCaGU----GGCGG- -5'
14612 5' -59.7 NC_003521.1 + 182386 0.66 0.868712
Target:  5'- --cGGAAaguucGCCCGGCaGCgcugcggcuuCGUCaACCGCCg -3'
miRNA:   3'- ucaCCUU-----CGGGCUG-CG----------GCAG-UGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 18922 0.66 0.868712
Target:  5'- gGGUGGc-GCCgCG-CGCCGgcaauCCGCCc -3'
miRNA:   3'- -UCACCuuCGG-GCuGCGGCagu--GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.