miRNA display CGI


Results 21 - 40 of 382 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14612 5' -59.7 NC_003521.1 + 80495 0.66 0.867316
Target:  5'- --cGGAGGCCaccgcgccgcccaCGGCuccgaugGCCGUgccCACCGCCu -3'
miRNA:   3'- ucaCCUUCGG-------------GCUG-------CGGCA---GUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 73762 0.66 0.861657
Target:  5'- uGUGGGccGGCaCCGGCGUcaugagcgccaCGcCGCUGCCc -3'
miRNA:   3'- uCACCU--UCG-GGCUGCG-----------GCaGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 143064 0.66 0.854419
Target:  5'- uGGUGGuggcGCCgGugGCgauaCGUCggauucgcaGCCGCCg -3'
miRNA:   3'- -UCACCuu--CGGgCugCG----GCAG---------UGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 202 0.66 0.87558
Target:  5'- --cGGccGGCCCGcCGCaCGcCGCCGCg -3'
miRNA:   3'- ucaCCu-UCGGGCuGCG-GCaGUGGCGg -5'
14612 5' -59.7 NC_003521.1 + 239900 0.66 0.874902
Target:  5'- uGGUGGuguuAGCCaUGaACGCCGUgCGCCagaugguGCCc -3'
miRNA:   3'- -UCACCu---UCGG-GC-UGCGGCA-GUGG-------CGG- -5'
14612 5' -59.7 NC_003521.1 + 132521 0.66 0.861657
Target:  5'- -cUGGucucaCGuCGUCGUCACCGCCa -3'
miRNA:   3'- ucACCuucggGCuGCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 236198 0.66 0.861657
Target:  5'- cGUGGGAGCCacguCGAUGCuaCGUCaaaccACCGUg -3'
miRNA:   3'- uCACCUUCGG----GCUGCG--GCAG-----UGGCGg -5'
14612 5' -59.7 NC_003521.1 + 193332 0.66 0.87558
Target:  5'- gGGUGGucGCCUu-CGUucccaUGUCGCCGCUc -3'
miRNA:   3'- -UCACCuuCGGGcuGCG-----GCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 78679 0.66 0.868712
Target:  5'- cAGgGGAAGCC----GCCGUCugCGCUc -3'
miRNA:   3'- -UCaCCUUCGGgcugCGGCAGugGCGG- -5'
14612 5' -59.7 NC_003521.1 + 63229 0.66 0.87558
Target:  5'- cAGcGGAacGGCCgGAa-CCGgcggCGCCGCCa -3'
miRNA:   3'- -UCaCCU--UCGGgCUgcGGCa---GUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 221929 0.66 0.882256
Target:  5'- cGG-GGcuGCCgCGGCGCCucguccucGUCGCUGCUc -3'
miRNA:   3'- -UCaCCuuCGG-GCUGCGG--------CAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 107446 0.66 0.861657
Target:  5'- uGGUGGGuAGCgUGACGCUGgCAUuuuugcuaaCGCCg -3'
miRNA:   3'- -UCACCU-UCGgGCUGCGGCaGUG---------GCGG- -5'
14612 5' -59.7 NC_003521.1 + 131397 0.66 0.860941
Target:  5'- --cGGGcgucAGCCUGGaccgcauCGCCGUCAaCGCCu -3'
miRNA:   3'- ucaCCU----UCGGGCU-------GCGGCAGUgGCGG- -5'
14612 5' -59.7 NC_003521.1 + 104333 0.66 0.859505
Target:  5'- aGGUGGucaaccaccugcucAAGCuuG-UGCCGcUCuACCGCCa -3'
miRNA:   3'- -UCACC--------------UUCGggCuGCGGC-AG-UGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 240751 0.66 0.87558
Target:  5'- --cGGccGGCCCGcCGCaCGcCGCCGCg -3'
miRNA:   3'- ucaCCu-UCGGGCuGCG-GCaGUGGCGg -5'
14612 5' -59.7 NC_003521.1 + 118197 0.66 0.882256
Target:  5'- aAGUcGggGCcgCCGagcGCGCgGcCGCCGCCg -3'
miRNA:   3'- -UCAcCuuCG--GGC---UGCGgCaGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 233426 0.66 0.861657
Target:  5'- cGGUGGcuccgacGGCCuCGACGCgGUC-CCuucugGCCa -3'
miRNA:   3'- -UCACCu------UCGG-GCUGCGgCAGuGG-----CGG- -5'
14612 5' -59.7 NC_003521.1 + 112969 0.66 0.854419
Target:  5'- uGGUGGGcaaccuGCCCGACggGCUGgCGCCgggGCCc -3'
miRNA:   3'- -UCACCUu-----CGGGCUG--CGGCaGUGG---CGG- -5'
14612 5' -59.7 NC_003521.1 + 239676 0.66 0.857336
Target:  5'- cGUGGcu-CCCgggGACGgcagcgguucgugucCCGUCGCCGCCu -3'
miRNA:   3'- uCACCuucGGG---CUGC---------------GGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 157949 0.66 0.87558
Target:  5'- cGUGGccugAGGCUgggcgacgaCGGCGCUGguagcgaCGCCGCCg -3'
miRNA:   3'- uCACC----UUCGG---------GCUGCGGCa------GUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.