miRNA display CGI


Results 1 - 20 of 382 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14612 5' -59.7 NC_003521.1 + 166960 0.65 0.886813
Target:  5'- gGGgGGAGGCUCucgucgcugugguuGACGUCGUUGCCcucgGCCg -3'
miRNA:   3'- -UCaCCUUCGGG--------------CUGCGGCAGUGG----CGG- -5'
14612 5' -59.7 NC_003521.1 + 132521 0.66 0.861657
Target:  5'- -cUGGucucaCGuCGUCGUCACCGCCa -3'
miRNA:   3'- ucACCuucggGCuGCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 78679 0.66 0.868712
Target:  5'- cAGgGGAAGCC----GCCGUCugCGCUc -3'
miRNA:   3'- -UCaCCUUCGGgcugCGGCAGugGCGG- -5'
14612 5' -59.7 NC_003521.1 + 131397 0.66 0.860941
Target:  5'- --cGGGcgucAGCCUGGaccgcauCGCCGUCAaCGCCu -3'
miRNA:   3'- ucaCCU----UCGGGCU-------GCGGCAGUgGCGG- -5'
14612 5' -59.7 NC_003521.1 + 152338 0.66 0.854419
Target:  5'- cGUucGGGCCCG-CGCCGaCGCUGCUc -3'
miRNA:   3'- uCAccUUCGGGCuGCGGCaGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 130092 0.66 0.858783
Target:  5'- gAGUGGAacugccagcugccgGGCCucuucugccccugCGuCGUCGgcggCGCCGCCg -3'
miRNA:   3'- -UCACCU--------------UCGG-------------GCuGCGGCa---GUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 137059 0.66 0.861657
Target:  5'- --aGGcaccGCCCGGCcccuGCUGUCuuCCGCCa -3'
miRNA:   3'- ucaCCuu--CGGGCUG----CGGCAGu-GGCGG- -5'
14612 5' -59.7 NC_003521.1 + 107446 0.66 0.861657
Target:  5'- uGGUGGGuAGCgUGACGCUGgCAUuuuugcuaaCGCCg -3'
miRNA:   3'- -UCACCU-UCGgGCUGCGGCaGUG---------GCGG- -5'
14612 5' -59.7 NC_003521.1 + 54158 0.66 0.861657
Target:  5'- -uUGGAgAGgCCGcCGCCuccGcCACCGCCg -3'
miRNA:   3'- ucACCU-UCgGGCuGCGG---CaGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 73762 0.66 0.861657
Target:  5'- uGUGGGccGGCaCCGGCGUcaugagcgccaCGcCGCUGCCc -3'
miRNA:   3'- uCACCU--UCG-GGCUGCG-----------GCaGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 211786 0.66 0.861657
Target:  5'- --aGGaAAGCCCGGaaCCGUguCCGUCg -3'
miRNA:   3'- ucaCC-UUCGGGCUgcGGCAguGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 68678 0.66 0.852213
Target:  5'- cGUGGAagaggcGGCCaugugccgcgaCGaacucaugaccgugGCGCCGUCGgCCGCCc -3'
miRNA:   3'- uCACCU------UCGG-----------GC--------------UGCGGCAGU-GGCGG- -5'
14612 5' -59.7 NC_003521.1 + 239676 0.66 0.857336
Target:  5'- cGUGGcu-CCCgggGACGgcagcgguucgugucCCGUCGCCGCCu -3'
miRNA:   3'- uCACCuucGGG---CUGC---------------GGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 80495 0.66 0.867316
Target:  5'- --cGGAGGCCaccgcgccgcccaCGGCuccgaugGCCGUgccCACCGCCu -3'
miRNA:   3'- ucaCCUUCGG-------------GCUG-------CGGCA---GUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 143064 0.66 0.854419
Target:  5'- uGGUGGuggcGCCgGugGCgauaCGUCggauucgcaGCCGCCg -3'
miRNA:   3'- -UCACCuu--CGGgCugCG----GCAG---------UGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 56450 0.66 0.854419
Target:  5'- cGUGGcccAGGUCCGagagGCGCCGcgcCACgGCCc -3'
miRNA:   3'- uCACC---UUCGGGC----UGCGGCa--GUGgCGG- -5'
14612 5' -59.7 NC_003521.1 + 142588 0.66 0.854419
Target:  5'- cGUGGccGCCCc-CGCC-UCcCCGCCu -3'
miRNA:   3'- uCACCuuCGGGcuGCGGcAGuGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 233426 0.66 0.861657
Target:  5'- cGGUGGcuccgacGGCCuCGACGCgGUC-CCuucugGCCa -3'
miRNA:   3'- -UCACCu------UCGG-GCUGCGgCAGuGG-----CGG- -5'
14612 5' -59.7 NC_003521.1 + 70900 0.66 0.868712
Target:  5'- --aGGGccagcAGCgCCGucagaGCCGUCAgCGCCa -3'
miRNA:   3'- ucaCCU-----UCG-GGCug---CGGCAGUgGCGG- -5'
14612 5' -59.7 NC_003521.1 + 236198 0.66 0.861657
Target:  5'- cGUGGGAGCCacguCGAUGCuaCGUCaaaccACCGUg -3'
miRNA:   3'- uCACCUUCGG----GCUGCG--GCAG-----UGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.