miRNA display CGI


Results 1 - 20 of 382 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14612 5' -59.7 NC_003521.1 + 215748 0.74 0.448377
Target:  5'- --aGG-AGCCCGACGaCgCGUUGCCGCUg -3'
miRNA:   3'- ucaCCuUCGGGCUGC-G-GCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 104774 0.76 0.367545
Target:  5'- uGGUGGggGCCUuuacCGCCccucgaUCACCGCCa -3'
miRNA:   3'- -UCACCuuCGGGcu--GCGGc-----AGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 181037 0.76 0.367545
Target:  5'- aGGUGGuAGUCgCGcuCGCCGUUACCGCUg -3'
miRNA:   3'- -UCACCuUCGG-GCu-GCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 233010 0.75 0.375167
Target:  5'- --cGGAuGGCCuUGACGCCGUCcaGCUGCCg -3'
miRNA:   3'- ucaCCU-UCGG-GCUGCGGCAG--UGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 70680 0.75 0.398664
Target:  5'- -cUGGAAaaCCGACGgCGUCugCGCCg -3'
miRNA:   3'- ucACCUUcgGGCUGCgGCAGugGCGG- -5'
14612 5' -59.7 NC_003521.1 + 104146 0.75 0.409947
Target:  5'- -aUGGAgcuGGCCCGGCGCCuguGuggcuucuugcucugUCGCCGCCg -3'
miRNA:   3'- ucACCU---UCGGGCUGCGG---C---------------AGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 148506 0.75 0.414844
Target:  5'- -aUGGAGGCCC-AUGCCGcggCugCGCCu -3'
miRNA:   3'- ucACCUUCGGGcUGCGGCa--GugGCGG- -5'
14612 5' -59.7 NC_003521.1 + 2707 0.74 0.422255
Target:  5'- --cGGAAcGCCacuCGugcgggaGCGCCGUCACCGCCu -3'
miRNA:   3'- ucaCCUU-CGG---GC-------UGCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 234323 0.74 0.439852
Target:  5'- --cGGuGAGCCUc-UGCCGUCACCGCCu -3'
miRNA:   3'- ucaCC-UUCGGGcuGCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 157123 0.76 0.352624
Target:  5'- cAGUGG--GUCCG-CGUCGUCACCGUCa -3'
miRNA:   3'- -UCACCuuCGGGCuGCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 116696 0.76 0.352624
Target:  5'- cGGUGGAGGCCuCGgaaGCGCCGUcCACUuCCa -3'
miRNA:   3'- -UCACCUUCGG-GC---UGCGGCA-GUGGcGG- -5'
14612 5' -59.7 NC_003521.1 + 102483 0.76 0.345326
Target:  5'- --aGaGAGGCCCGAgaCGCCGUCGCgcaGCCg -3'
miRNA:   3'- ucaC-CUUCGGGCU--GCGGCAGUGg--CGG- -5'
14612 5' -59.7 NC_003521.1 + 100235 0.84 0.113894
Target:  5'- aGGUGGAGcugggcgagguGCCCGACgacgaGCUGUCGCCGCCg -3'
miRNA:   3'- -UCACCUU-----------CGGGCUG-----CGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 122865 0.83 0.131888
Target:  5'- uGGUGGuuGCUaugguugaCGACGCCGUCACCGCUc -3'
miRNA:   3'- -UCACCuuCGG--------GCUGCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 42613 0.83 0.138447
Target:  5'- --cGGccGCCggCGGCGCCGUCGCCGCCa -3'
miRNA:   3'- ucaCCuuCGG--GCUGCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 104036 0.81 0.184435
Target:  5'- --aGGggGUacacgcagugcuCCGACGCCGUCugCGCCa -3'
miRNA:   3'- ucaCCuuCG------------GGCUGCGGCAGugGCGG- -5'
14612 5' -59.7 NC_003521.1 + 151078 0.79 0.222173
Target:  5'- --cGGccGCgCCGGCuGCCGUCACCGCCc -3'
miRNA:   3'- ucaCCuuCG-GGCUG-CGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 74197 0.79 0.2434
Target:  5'- --cGGcgcgcGGCCCGACGCCGUCuuCUGCCa -3'
miRNA:   3'- ucaCCu----UCGGGCUGCGGCAGu-GGCGG- -5'
14612 5' -59.7 NC_003521.1 + 143172 0.78 0.27837
Target:  5'- cGUGGggGUCgGAC-CCGgCGCCGCCg -3'
miRNA:   3'- uCACCuuCGGgCUGcGGCaGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 116206 0.77 0.290886
Target:  5'- --aGGGAGa-CGuCGCCGUCGCCGCCg -3'
miRNA:   3'- ucaCCUUCggGCuGCGGCAGUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.