miRNA display CGI


Results 1 - 20 of 382 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14612 5' -59.7 NC_003521.1 + 202 0.66 0.87558
Target:  5'- --cGGccGGCCCGcCGCaCGcCGCCGCg -3'
miRNA:   3'- ucaCCu-UCGGGCuGCG-GCaGUGGCGg -5'
14612 5' -59.7 NC_003521.1 + 767 0.69 0.746457
Target:  5'- --cGGAGGCCaagcaGGCGCCaUCggcggaggACCGCCc -3'
miRNA:   3'- ucaCCUUCGGg----CUGCGGcAG--------UGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 1161 0.69 0.718832
Target:  5'- --cGGGAGCCaCGGCGCCGcCuacgggacuggACgGCCu -3'
miRNA:   3'- ucaCCUUCGG-GCUGCGGCaG-----------UGgCGG- -5'
14612 5' -59.7 NC_003521.1 + 1859 0.7 0.671582
Target:  5'- --gGGAcggGGCCCGGCGCCucuaaUACCGCa -3'
miRNA:   3'- ucaCCU---UCGGGCUGCGGca---GUGGCGg -5'
14612 5' -59.7 NC_003521.1 + 2707 0.74 0.422255
Target:  5'- --cGGAAcGCCacuCGugcgggaGCGCCGUCACCGCCu -3'
miRNA:   3'- ucaCCUU-CGG---GC-------UGCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 3388 0.67 0.80747
Target:  5'- -uUGGGuuucucGCCCGACGCCGgCAUCcggggaugggGCCa -3'
miRNA:   3'- ucACCUu-----CGGGCUGCGGCaGUGG----------CGG- -5'
14612 5' -59.7 NC_003521.1 + 3842 0.67 0.839417
Target:  5'- -aUGGaAAGCucugCCGACGCCGUaccuGuuGCCg -3'
miRNA:   3'- ucACC-UUCG----GGCUGCGGCAg---UggCGG- -5'
14612 5' -59.7 NC_003521.1 + 3967 0.66 0.868712
Target:  5'- aAGcGGAGGaCCCGGgGCacCGUCAgCGCg -3'
miRNA:   3'- -UCaCCUUC-GGGCUgCG--GCAGUgGCGg -5'
14612 5' -59.7 NC_003521.1 + 4321 0.69 0.700076
Target:  5'- --cGGggGCUCGACcguccaugccuGgCGcCACCGCCg -3'
miRNA:   3'- ucaCCuuCGGGCUG-----------CgGCaGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 4851 0.67 0.823751
Target:  5'- cAGUGcGGGCgUCGACGUCGaaUCGCgGCCu -3'
miRNA:   3'- -UCACcUUCG-GGCUGCGGC--AGUGgCGG- -5'
14612 5' -59.7 NC_003521.1 + 5534 0.72 0.575787
Target:  5'- cGGUGacGGCagCCGGCGCgGcCGCCGCCa -3'
miRNA:   3'- -UCACcuUCG--GGCUGCGgCaGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 5683 0.73 0.480689
Target:  5'- --cGGgcGCCCGuccgcggggaacggGCGCCGUCACCGg- -3'
miRNA:   3'- ucaCCuuCGGGC--------------UGCGGCAGUGGCgg -5'
14612 5' -59.7 NC_003521.1 + 6725 0.7 0.690618
Target:  5'- cGUGGugcaGGGCCUGACGCagccagCGCuCGCCg -3'
miRNA:   3'- uCACC----UUCGGGCUGCGgca---GUG-GCGG- -5'
14612 5' -59.7 NC_003521.1 + 7996 0.67 0.847004
Target:  5'- cGGgGGAGGUaCCGgggcaGCGCCGUagcuccagACCGCCg -3'
miRNA:   3'- -UCaCCUUCG-GGC-----UGCGGCAg-------UGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 13899 0.71 0.585305
Target:  5'- --gGGggGCCCGGCGCgGaggggGCCGCg -3'
miRNA:   3'- ucaCCuuCGGGCUGCGgCag---UGGCGg -5'
14612 5' -59.7 NC_003521.1 + 13924 0.66 0.854419
Target:  5'- --cGGAGGCC--GCGCUG--GCCGCCg -3'
miRNA:   3'- ucaCCUUCGGgcUGCGGCagUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 14437 0.73 0.5196
Target:  5'- cGUGGugcacacGGCCCugcGGCGgCGUCAgCCGCCg -3'
miRNA:   3'- uCACCu------UCGGG---CUGCgGCAGU-GGCGG- -5'
14612 5' -59.7 NC_003521.1 + 14648 0.7 0.6754
Target:  5'- cAGUGcGucuGGCCCuucugcgcgcugaacGACGCCGagUGCCGCCg -3'
miRNA:   3'- -UCAC-Cu--UCGGG---------------CUGCGGCa-GUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 14801 0.69 0.718832
Target:  5'- -cUGGAcuGGUUCGGCGCCGUguaCGCCa -3'
miRNA:   3'- ucACCU--UCGGGCUGCGGCAgugGCGG- -5'
14612 5' -59.7 NC_003521.1 + 16077 0.68 0.755499
Target:  5'- --cGGAGcCCCGACGCgcUgGCCGCCu -3'
miRNA:   3'- ucaCCUUcGGGCUGCGgcAgUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.