miRNA display CGI


Results 21 - 40 of 382 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14612 5' -59.7 NC_003521.1 + 17427 0.66 0.882256
Target:  5'- --cGGGgcgccacacGGCCCG-CGUCGgggCGCCGCg -3'
miRNA:   3'- ucaCCU---------UCGGGCuGCGGCa--GUGGCGg -5'
14612 5' -59.7 NC_003521.1 + 18787 0.67 0.847004
Target:  5'- cGGUGGAGGgCCaGCGCUGcuuUCGCgugGCCa -3'
miRNA:   3'- -UCACCUUCgGGcUGCGGC---AGUGg--CGG- -5'
14612 5' -59.7 NC_003521.1 + 18922 0.66 0.868712
Target:  5'- gGGUGGc-GCCgCG-CGCCGgcaauCCGCCc -3'
miRNA:   3'- -UCACCuuCGG-GCuGCGGCagu--GGCGG- -5'
14612 5' -59.7 NC_003521.1 + 19448 0.66 0.882256
Target:  5'- aAGgggGGAGGCgCGGCGggaccaUGUCGCUGCg -3'
miRNA:   3'- -UCa--CCUUCGgGCUGCg-----GCAGUGGCGg -5'
14612 5' -59.7 NC_003521.1 + 20347 0.66 0.854419
Target:  5'- gGGUGGAAGCCCuggaGugGUUcaagagguUCACCGUg -3'
miRNA:   3'- -UCACCUUCGGG----CugCGGc-------AGUGGCGg -5'
14612 5' -59.7 NC_003521.1 + 21299 0.68 0.799117
Target:  5'- -cUGGcuGCgCGugGCgGUCAUCGUCa -3'
miRNA:   3'- ucACCuuCGgGCugCGgCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 22087 0.75 0.406703
Target:  5'- -aUGGggGaccguCCCGACGCCGcuucucgccCGCCGCCg -3'
miRNA:   3'- ucACCuuC-----GGGCUGCGGCa--------GUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 22169 0.75 0.390728
Target:  5'- cGGUGGAgagggacgaGGCgccgccggCCGugGCCGcUUACCGCCg -3'
miRNA:   3'- -UCACCU---------UCG--------GGCugCGGC-AGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 22719 0.71 0.633225
Target:  5'- cGUGGAcAGCCUGAaaCGuuGUCGCCuaCg -3'
miRNA:   3'- uCACCU-UCGGGCU--GCggCAGUGGcgG- -5'
14612 5' -59.7 NC_003521.1 + 22775 0.72 0.52883
Target:  5'- cGGUGGA--CCUcaucuaccugcgGACGCCGcCGCCGCCc -3'
miRNA:   3'- -UCACCUucGGG------------CUGCGGCaGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 24624 0.69 0.709482
Target:  5'- --aGGAGGaCCCcGCGCCGgugcUCAgCGCCu -3'
miRNA:   3'- ucaCCUUC-GGGcUGCGGC----AGUgGCGG- -5'
14612 5' -59.7 NC_003521.1 + 27345 0.76 0.331057
Target:  5'- uGUGGAuggcguGCaCCGGCGCCGUCAUgacgugcgaCGCCu -3'
miRNA:   3'- uCACCUu-----CG-GGCUGCGGCAGUG---------GCGG- -5'
14612 5' -59.7 NC_003521.1 + 30055 0.69 0.728116
Target:  5'- uGUGGuacgucucAGUCUG-UGCCGUCcCCGCCg -3'
miRNA:   3'- uCACCu-------UCGGGCuGCGGCAGuGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 30837 0.69 0.737326
Target:  5'- --cGGGAcGCUgGugGCCGUCuggGCCGUCc -3'
miRNA:   3'- ucaCCUU-CGGgCugCGGCAG---UGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 31260 0.71 0.633225
Target:  5'- --cGGA--CCCGcCGCCaccGUCGCCGCCa -3'
miRNA:   3'- ucaCCUucGGGCuGCGG---CAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 32863 0.73 0.501335
Target:  5'- -cUGGAGGCCgaucgguuUGGCGcCCG-CGCCGCCg -3'
miRNA:   3'- ucACCUUCGG--------GCUGC-GGCaGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 36018 0.7 0.662017
Target:  5'- aGGUGGcGGCCCcACGaCCGUCuuggcccucuUCGCCg -3'
miRNA:   3'- -UCACCuUCGGGcUGC-GGCAGu---------GGCGG- -5'
14612 5' -59.7 NC_003521.1 + 36947 0.66 0.87558
Target:  5'- -aUGG--GCCCGACGCUgGUCGUCGCa -3'
miRNA:   3'- ucACCuuCGGGCUGCGG-CAGUGGCGg -5'
14612 5' -59.7 NC_003521.1 + 37330 0.66 0.882256
Target:  5'- gGGUGGggGCggucgcggagGACGCaCGUauCCGCCg -3'
miRNA:   3'- -UCACCuuCGgg--------CUGCG-GCAguGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 38585 0.7 0.641872
Target:  5'- uGUGG-GGCgCGACGCCGugucccuggguguUCGCCGUa -3'
miRNA:   3'- uCACCuUCGgGCUGCGGC-------------AGUGGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.