miRNA display CGI


Results 21 - 40 of 382 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14612 5' -59.7 NC_003521.1 + 157123 0.76 0.352624
Target:  5'- cAGUGG--GUCCG-CGUCGUCACCGUCa -3'
miRNA:   3'- -UCACCuuCGGGCuGCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 207707 0.76 0.360031
Target:  5'- -cUGGAgaaGGCCCGcuACGCCGUCAUCGgCu -3'
miRNA:   3'- ucACCU---UCGGGC--UGCGGCAGUGGCgG- -5'
14612 5' -59.7 NC_003521.1 + 90243 0.76 0.366789
Target:  5'- uAGUGaggaggaGGAGCCgCGcCGCCGcCGCCGCCa -3'
miRNA:   3'- -UCAC-------CUUCGG-GCuGCGGCaGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 104774 0.76 0.367545
Target:  5'- uGGUGGggGCCUuuacCGCCccucgaUCACCGCCa -3'
miRNA:   3'- -UCACCuuCGGGcu--GCGGc-----AGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 181037 0.76 0.367545
Target:  5'- aGGUGGuAGUCgCGcuCGCCGUUACCGCUg -3'
miRNA:   3'- -UCACCuUCGG-GCu-GCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 233010 0.75 0.375167
Target:  5'- --cGGAuGGCCuUGACGCCGUCcaGCUGCCg -3'
miRNA:   3'- ucaCCU-UCGG-GCUGCGGCAG--UGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 86911 0.75 0.382895
Target:  5'- gAGUGGAAGCUgcacgCGGCGCUGUUccccuACCGCg -3'
miRNA:   3'- -UCACCUUCGG-----GCUGCGGCAG-----UGGCGg -5'
14612 5' -59.7 NC_003521.1 + 22169 0.75 0.390728
Target:  5'- cGGUGGAgagggacgaGGCgccgccggCCGugGCCGcUUACCGCCg -3'
miRNA:   3'- -UCACCU---------UCG--------GGCugCGGC-AGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 70680 0.75 0.398664
Target:  5'- -cUGGAAaaCCGACGgCGUCugCGCCg -3'
miRNA:   3'- ucACCUUcgGGCUGCgGCAGugGCGG- -5'
14612 5' -59.7 NC_003521.1 + 22087 0.75 0.406703
Target:  5'- -aUGGggGaccguCCCGACGCCGcuucucgccCGCCGCCg -3'
miRNA:   3'- ucACCuuC-----GGGCUGCGGCa--------GUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 104146 0.75 0.409947
Target:  5'- -aUGGAgcuGGCCCGGCGCCuguGuggcuucuugcucugUCGCCGCCg -3'
miRNA:   3'- ucACCU---UCGGGCUGCGG---C---------------AGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 148506 0.75 0.414844
Target:  5'- -aUGGAGGCCC-AUGCCGcggCugCGCCu -3'
miRNA:   3'- ucACCUUCGGGcUGCGGCa--GugGCGG- -5'
14612 5' -59.7 NC_003521.1 + 2707 0.74 0.422255
Target:  5'- --cGGAAcGCCacuCGugcgggaGCGCCGUCACCGCCu -3'
miRNA:   3'- ucaCCUU-CGG---GC-------UGCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 172393 0.74 0.423083
Target:  5'- cGGuUGaGggGCgCCGGCggaGCCGUCGCCGCg -3'
miRNA:   3'- -UC-AC-CuuCG-GGCUG---CGGCAGUGGCGg -5'
14612 5' -59.7 NC_003521.1 + 234323 0.74 0.439852
Target:  5'- --cGGuGAGCCUc-UGCCGUCACCGCCu -3'
miRNA:   3'- ucaCC-UUCGGGcuGCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 215748 0.74 0.448377
Target:  5'- --aGG-AGCCCGACGaCgCGUUGCCGCUg -3'
miRNA:   3'- ucaCCuUCGGGCUGC-G-GCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 109743 0.74 0.448378
Target:  5'- --cGG-AGCCCGcgcgagcCGCgGUCGCCGCCa -3'
miRNA:   3'- ucaCCuUCGGGCu------GCGgCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 129303 0.74 0.456128
Target:  5'- cGUGGAacuugauGGCgUG-CGCCGcCGCCGCCa -3'
miRNA:   3'- uCACCU-------UCGgGCuGCGGCaGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 39445 0.74 0.456994
Target:  5'- --cGGccGAGCCCGGCGCCGaggGCCGCg -3'
miRNA:   3'- ucaCC--UUCGGGCUGCGGCag-UGGCGg -5'
14612 5' -59.7 NC_003521.1 + 235390 0.74 0.456994
Target:  5'- gGGaUGG-AGUCCGACGCCGauUCcuCCGCCu -3'
miRNA:   3'- -UC-ACCuUCGGGCUGCGGC--AGu-GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.