miRNA display CGI


Results 1 - 20 of 382 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14612 5' -59.7 NC_003521.1 + 221079 1.12 0.001667
Target:  5'- aAGUGGAAGCCCGACGCCGUCACCGCCa -3'
miRNA:   3'- -UCACCUUCGGGCUGCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 100235 0.84 0.113894
Target:  5'- aGGUGGAGcugggcgagguGCCCGACgacgaGCUGUCGCCGCCg -3'
miRNA:   3'- -UCACCUU-----------CGGGCUG-----CGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 122865 0.83 0.131888
Target:  5'- uGGUGGuuGCUaugguugaCGACGCCGUCACCGCUc -3'
miRNA:   3'- -UCACCuuCGG--------GCUGCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 42613 0.83 0.138447
Target:  5'- --cGGccGCCggCGGCGCCGUCGCCGCCa -3'
miRNA:   3'- ucaCCuuCGG--GCUGCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 104036 0.81 0.184435
Target:  5'- --aGGggGUacacgcagugcuCCGACGCCGUCugCGCCa -3'
miRNA:   3'- ucaCCuuCG------------GGCUGCGGCAGugGCGG- -5'
14612 5' -59.7 NC_003521.1 + 108217 0.8 0.202542
Target:  5'- -cUGGAAGCCguugcgGACGCCGaCGCCGCCg -3'
miRNA:   3'- ucACCUUCGGg-----CUGCGGCaGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 151078 0.79 0.222173
Target:  5'- --cGGccGCgCCGGCuGCCGUCACCGCCc -3'
miRNA:   3'- ucaCCuuCG-GGCUG-CGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 74197 0.79 0.2434
Target:  5'- --cGGcgcgcGGCCCGACGCCGUCuuCUGCCa -3'
miRNA:   3'- ucaCCu----UCGGGCUGCGGCAGu-GGCGG- -5'
14612 5' -59.7 NC_003521.1 + 49673 0.78 0.272275
Target:  5'- gGGgccgGGcGAGCgCGGCGCUGUCGCCGUCa -3'
miRNA:   3'- -UCa---CC-UUCGgGCUGCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 143172 0.78 0.27837
Target:  5'- cGUGGggGUCgGAC-CCGgCGCCGCCg -3'
miRNA:   3'- uCACCuuCGGgCUGcGGCaGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 61897 0.78 0.284574
Target:  5'- --aGGAAGCCuCGuCGCCGUCAUCGUg -3'
miRNA:   3'- ucaCCUUCGG-GCuGCGGCAGUGGCGg -5'
14612 5' -59.7 NC_003521.1 + 116206 0.77 0.290886
Target:  5'- --aGGGAGa-CGuCGCCGUCGCCGCCg -3'
miRNA:   3'- ucaCCUUCggGCuGCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 171406 0.77 0.290886
Target:  5'- cGUGGuGGUgCG-CGCCGUCACCGUCc -3'
miRNA:   3'- uCACCuUCGgGCuGCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 138033 0.77 0.310478
Target:  5'- gAGcUGGcGGCcgCCGGCGCCGUCAUCGCg -3'
miRNA:   3'- -UC-ACCuUCG--GGCUGCGGCAGUGGCGg -5'
14612 5' -59.7 NC_003521.1 + 206112 0.77 0.317228
Target:  5'- cGUGGAcGCgCaCGGCGCCGUCuuCGCCu -3'
miRNA:   3'- uCACCUuCG-G-GCUGCGGCAGugGCGG- -5'
14612 5' -59.7 NC_003521.1 + 27345 0.76 0.331057
Target:  5'- uGUGGAuggcguGCaCCGGCGCCGUCAUgacgugcgaCGCCu -3'
miRNA:   3'- uCACCUu-----CG-GGCUGCGGCAGUG---------GCGG- -5'
14612 5' -59.7 NC_003521.1 + 235288 0.76 0.331057
Target:  5'- cGGcGGccGCgCCGGCuGCCGUCACCGUCg -3'
miRNA:   3'- -UCaCCuuCG-GGCUG-CGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 49730 0.76 0.331057
Target:  5'- uGGUGGAcgagacgcAGCCCGcCGCCGccaccacggUCGCCGCg -3'
miRNA:   3'- -UCACCU--------UCGGGCuGCGGC---------AGUGGCGg -5'
14612 5' -59.7 NC_003521.1 + 102483 0.76 0.345326
Target:  5'- --aGaGAGGCCCGAgaCGCCGUCGCgcaGCCg -3'
miRNA:   3'- ucaC-CUUCGGGCU--GCGGCAGUGg--CGG- -5'
14612 5' -59.7 NC_003521.1 + 116696 0.76 0.352624
Target:  5'- cGGUGGAGGCCuCGgaaGCGCCGUcCACUuCCa -3'
miRNA:   3'- -UCACCUUCGG-GC---UGCGGCA-GUGGcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.