miRNA display CGI


Results 1 - 20 of 382 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14612 5' -59.7 NC_003521.1 + 240751 0.66 0.87558
Target:  5'- --cGGccGGCCCGcCGCaCGcCGCCGCg -3'
miRNA:   3'- ucaCCu-UCGGGCuGCG-GCaGUGGCGg -5'
14612 5' -59.7 NC_003521.1 + 239900 0.66 0.874902
Target:  5'- uGGUGGuguuAGCCaUGaACGCCGUgCGCCagaugguGCCc -3'
miRNA:   3'- -UCACCu---UCGG-GC-UGCGGCA-GUGG-------CGG- -5'
14612 5' -59.7 NC_003521.1 + 239780 0.7 0.690618
Target:  5'- cGGUGGc--CCCGACGCCGgccaucuggCugCGCg -3'
miRNA:   3'- -UCACCuucGGGCUGCGGCa--------GugGCGg -5'
14612 5' -59.7 NC_003521.1 + 239676 0.66 0.857336
Target:  5'- cGUGGcu-CCCgggGACGgcagcgguucgugucCCGUCGCCGCCu -3'
miRNA:   3'- uCACCuucGGG---CUGC---------------GGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 238812 0.7 0.641872
Target:  5'- uGUGG-GGCgCGACGCCGugucccuggguguUCGCCGUa -3'
miRNA:   3'- uCACCuUCGgGCUGCGGC-------------AGUGGCGg -5'
14612 5' -59.7 NC_003521.1 + 236509 0.67 0.847004
Target:  5'- -aUGGAcggucgAGCCCc-CGCCGUCccuCUGCCu -3'
miRNA:   3'- ucACCU------UCGGGcuGCGGCAGu--GGCGG- -5'
14612 5' -59.7 NC_003521.1 + 236198 0.66 0.861657
Target:  5'- cGUGGGAGCCacguCGAUGCuaCGUCaaaccACCGUg -3'
miRNA:   3'- uCACCUUCGG----GCUGCG--GCAG-----UGGCGg -5'
14612 5' -59.7 NC_003521.1 + 235390 0.74 0.456994
Target:  5'- gGGaUGG-AGUCCGACGCCGauUCcuCCGCCu -3'
miRNA:   3'- -UC-ACCuUCGGGCUGCGGC--AGu-GGCGG- -5'
14612 5' -59.7 NC_003521.1 + 235288 0.76 0.331057
Target:  5'- cGGcGGccGCgCCGGCuGCCGUCACCGUCg -3'
miRNA:   3'- -UCaCCuuCG-GGCUG-CGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 234592 0.69 0.699132
Target:  5'- --cGGGAGCgCCGGucuccauucggacCGCCGUCauGCCGCa -3'
miRNA:   3'- ucaCCUUCG-GGCU-------------GCGGCAG--UGGCGg -5'
14612 5' -59.7 NC_003521.1 + 234417 0.73 0.5196
Target:  5'- --aGGcGGCaaGAC-CCGUCGCCGCCg -3'
miRNA:   3'- ucaCCuUCGggCUGcGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 234323 0.74 0.439852
Target:  5'- --cGGuGAGCCUc-UGCCGUCACCGCCu -3'
miRNA:   3'- ucaCC-UUCGGGcuGCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 233426 0.66 0.861657
Target:  5'- cGGUGGcuccgacGGCCuCGACGCgGUC-CCuucugGCCa -3'
miRNA:   3'- -UCACCu------UCGG-GCUGCGgCAGuGG-----CGG- -5'
14612 5' -59.7 NC_003521.1 + 233182 0.67 0.815684
Target:  5'- cGUGGcGGCC----GCCGUUACCGUCg -3'
miRNA:   3'- uCACCuUCGGgcugCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 233010 0.75 0.375167
Target:  5'- --cGGAuGGCCuUGACGCCGUCcaGCUGCCg -3'
miRNA:   3'- ucaCCU-UCGG-GCUGCGGCAG--UGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 231956 0.67 0.839417
Target:  5'- --aGGAauAGUCCGACaGCCauagCACCGCg -3'
miRNA:   3'- ucaCCU--UCGGGCUG-CGGca--GUGGCGg -5'
14612 5' -59.7 NC_003521.1 + 230324 0.67 0.839417
Target:  5'- -cUGGggGgCC-ACGCCaUCcCCGCCg -3'
miRNA:   3'- ucACCuuCgGGcUGCGGcAGuGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 227635 0.66 0.868712
Target:  5'- --cGGcGGCCCGAgcggcaCGCCugGUCAggacCCGCCu -3'
miRNA:   3'- ucaCCuUCGGGCU------GCGG--CAGU----GGCGG- -5'
14612 5' -59.7 NC_003521.1 + 226369 0.68 0.79063
Target:  5'- --cGGGAGCggcggCUGACGCCGcCGCaggGCCg -3'
miRNA:   3'- ucaCCUUCG-----GGCUGCGGCaGUGg--CGG- -5'
14612 5' -59.7 NC_003521.1 + 225519 0.71 0.623618
Target:  5'- ------cGCUCGGCGCCGUCGCgCGUCg -3'
miRNA:   3'- ucaccuuCGGGCUGCGGCAGUG-GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.