miRNA display CGI


Results 1 - 20 of 382 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14612 5' -59.7 NC_003521.1 + 108217 0.8 0.202542
Target:  5'- -cUGGAAGCCguugcgGACGCCGaCGCCGCCg -3'
miRNA:   3'- ucACCUUCGGg-----CUGCGGCaGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 74915 0.73 0.481578
Target:  5'- cGGUGGAgucGGCCCGGCaGCgCGgggugguguaccCGCCGCCc -3'
miRNA:   3'- -UCACCU---UCGGGCUG-CG-GCa-----------GUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 166120 0.73 0.483359
Target:  5'- --aGGGAGCCgcugccgcggCGcCGCCGUCGCUGCUg -3'
miRNA:   3'- ucaCCUUCGG----------GCuGCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 166960 0.65 0.886813
Target:  5'- gGGgGGAGGCUCucgucgcugugguuGACGUCGUUGCCcucgGCCg -3'
miRNA:   3'- -UCaCCUUCGGG--------------CUGCGGCAGUGG----CGG- -5'
14612 5' -59.7 NC_003521.1 + 138033 0.77 0.310478
Target:  5'- gAGcUGGcGGCcgCCGGCGCCGUCAUCGCg -3'
miRNA:   3'- -UC-ACCuUCG--GGCUGCGGCAGUGGCGg -5'
14612 5' -59.7 NC_003521.1 + 206112 0.77 0.317228
Target:  5'- cGUGGAcGCgCaCGGCGCCGUCuuCGCCu -3'
miRNA:   3'- uCACCUuCG-G-GCUGCGGCAGugGCGG- -5'
14612 5' -59.7 NC_003521.1 + 49730 0.76 0.331057
Target:  5'- uGGUGGAcgagacgcAGCCCGcCGCCGccaccacggUCGCCGCg -3'
miRNA:   3'- -UCACCU--------UCGGGCuGCGGC---------AGUGGCGg -5'
14612 5' -59.7 NC_003521.1 + 235288 0.76 0.331057
Target:  5'- cGGcGGccGCgCCGGCuGCCGUCACCGUCg -3'
miRNA:   3'- -UCaCCuuCG-GGCUG-CGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 86911 0.75 0.382895
Target:  5'- gAGUGGAAGCUgcacgCGGCGCUGUUccccuACCGCg -3'
miRNA:   3'- -UCACCUUCGG-----GCUGCGGCAG-----UGGCGg -5'
14612 5' -59.7 NC_003521.1 + 44087 0.74 0.465697
Target:  5'- cGGUGcAGGCgCCGcCGCCaccaccGUCGCCGCCg -3'
miRNA:   3'- -UCACcUUCG-GGCuGCGG------CAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 22087 0.75 0.406703
Target:  5'- -aUGGggGaccguCCCGACGCCGcuucucgccCGCCGCCg -3'
miRNA:   3'- ucACCuuC-----GGGCUGCGGCa--------GUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 90243 0.76 0.366789
Target:  5'- uAGUGaggaggaGGAGCCgCGcCGCCGcCGCCGCCa -3'
miRNA:   3'- -UCAC-------CUUCGG-GCuGCGGCaGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 49673 0.78 0.272275
Target:  5'- gGGgccgGGcGAGCgCGGCGCUGUCGCCGUCa -3'
miRNA:   3'- -UCa---CC-UUCGgGCUGCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 172393 0.74 0.423083
Target:  5'- cGGuUGaGggGCgCCGGCggaGCCGUCGCCGCg -3'
miRNA:   3'- -UC-AC-CuuCG-GGCUG---CGGCAGUGGCGg -5'
14612 5' -59.7 NC_003521.1 + 61897 0.78 0.284574
Target:  5'- --aGGAAGCCuCGuCGCCGUCAUCGUg -3'
miRNA:   3'- ucaCCUUCGG-GCuGCGGCAGUGGCGg -5'
14612 5' -59.7 NC_003521.1 + 207707 0.76 0.360031
Target:  5'- -cUGGAgaaGGCCCGcuACGCCGUCAUCGgCu -3'
miRNA:   3'- ucACCU---UCGGGC--UGCGGCAGUGGCgG- -5'
14612 5' -59.7 NC_003521.1 + 109743 0.74 0.448378
Target:  5'- --cGG-AGCCCGcgcgagcCGCgGUCGCCGCCa -3'
miRNA:   3'- ucaCCuUCGGGCu------GCGgCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 98142 0.73 0.483359
Target:  5'- cGUGGuAGCugCUGcCGCCGUCGCUGCUg -3'
miRNA:   3'- uCACCuUCG--GGCuGCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 171406 0.77 0.290886
Target:  5'- cGUGGuGGUgCG-CGCCGUCACCGUCc -3'
miRNA:   3'- uCACCuUCGgGCuGCGGCAGUGGCGG- -5'
14612 5' -59.7 NC_003521.1 + 27345 0.76 0.331057
Target:  5'- uGUGGAuggcguGCaCCGGCGCCGUCAUgacgugcgaCGCCu -3'
miRNA:   3'- uCACCUu-----CG-GGCUGCGGCAGUG---------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.