miRNA display CGI


Results 41 - 60 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14613 3' -55.7 NC_003521.1 + 73293 0.66 0.952155
Target:  5'- cUGCG--GCAG-GACGCCGAGCagaccuGGCUg -3'
miRNA:   3'- -ACGCauCGUCuUUGUGGCUCGc-----CCGG- -5'
14613 3' -55.7 NC_003521.1 + 148425 0.66 0.952155
Target:  5'- gUGCG-GGCGGccGCGCCG-GCGGcuccaggggugGCCg -3'
miRNA:   3'- -ACGCaUCGUCuuUGUGGCuCGCC-----------CGG- -5'
14613 3' -55.7 NC_003521.1 + 102946 0.66 0.952155
Target:  5'- gGCGUcGCGGuccAGGCGCuCGGGCgucgGGGCUc -3'
miRNA:   3'- aCGCAuCGUC---UUUGUG-GCUCG----CCCGG- -5'
14613 3' -55.7 NC_003521.1 + 196368 0.66 0.96652
Target:  5'- gUGCGUGGCGuuguacucgcauCGCCGAGCcgccgucacgauGGGCg -3'
miRNA:   3'- -ACGCAUCGUcuuu--------GUGGCUCG------------CCCGg -5'
14613 3' -55.7 NC_003521.1 + 218085 0.66 0.969212
Target:  5'- aGCGaGGCGGcgGCGCCGGuGacgaugaGGGCg -3'
miRNA:   3'- aCGCaUCGUCuuUGUGGCU-Cg------CCCGg -5'
14613 3' -55.7 NC_003521.1 + 118930 0.66 0.96301
Target:  5'- gGCGUgGGCGGcgGCGucCCGucaGGGCCa -3'
miRNA:   3'- aCGCA-UCGUCuuUGU--GGCucgCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 220086 0.66 0.959603
Target:  5'- cGCGUAcacGCAGcugauGCACCGccAGCGGuaCg -3'
miRNA:   3'- aCGCAU---CGUCuu---UGUGGC--UCGCCcgG- -5'
14613 3' -55.7 NC_003521.1 + 35034 0.66 0.966211
Target:  5'- cGCGguugGGCAcgcucAUGCCGuGCGGcGCCa -3'
miRNA:   3'- aCGCa---UCGUcuu--UGUGGCuCGCC-CGG- -5'
14613 3' -55.7 NC_003521.1 + 215482 0.66 0.966211
Target:  5'- gGCGaaggccaggAGCAGGGACAaCGuGCcGGCCa -3'
miRNA:   3'- aCGCa--------UCGUCUUUGUgGCuCGcCCGG- -5'
14613 3' -55.7 NC_003521.1 + 224010 0.66 0.966211
Target:  5'- cUGCGgcagcGGCGGGcccGGCGguCgGGGCGGGCg -3'
miRNA:   3'- -ACGCa----UCGUCU---UUGU--GgCUCGCCCGg -5'
14613 3' -55.7 NC_003521.1 + 181748 0.66 0.966211
Target:  5'- aGCGUAccGCAGAu-CACCaggGAGaaGGCCc -3'
miRNA:   3'- aCGCAU--CGUCUuuGUGG---CUCgcCCGG- -5'
14613 3' -55.7 NC_003521.1 + 112203 0.66 0.958182
Target:  5'- cGCGUguccgaAGCGGAGGCGCUGcucaaucagcaguGCGaGGUCg -3'
miRNA:   3'- aCGCA------UCGUCUUUGUGGCu------------CGC-CCGG- -5'
14613 3' -55.7 NC_003521.1 + 113863 0.66 0.964315
Target:  5'- aGCGUGGCGGugguguAAGCGCCGucacgugucgcccgcAGCauaaaGGGCg -3'
miRNA:   3'- aCGCAUCGUC------UUUGUGGC---------------UCG-----CCCGg -5'
14613 3' -55.7 NC_003521.1 + 56553 0.66 0.966211
Target:  5'- aGCGUAGC----ACACCcccGUGGGCUc -3'
miRNA:   3'- aCGCAUCGucuuUGUGGcu-CGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 139360 0.66 0.959603
Target:  5'- gUGuUGUAGCAGcuggcgaaGAGCGCCGuGCucuuGGCCc -3'
miRNA:   3'- -AC-GCAUCGUC--------UUUGUGGCuCGc---CCGG- -5'
14613 3' -55.7 NC_003521.1 + 32923 0.66 0.96301
Target:  5'- gGCGUAGguG--GCGCCGgAGagcccaaGGGCg -3'
miRNA:   3'- aCGCAUCguCuuUGUGGC-UCg------CCCGg -5'
14613 3' -55.7 NC_003521.1 + 76180 0.66 0.96301
Target:  5'- cGCGggccuGCGuGAGGCGCCacaGGaUGGGCCa -3'
miRNA:   3'- aCGCau---CGU-CUUUGUGGc--UC-GCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 129218 0.66 0.96301
Target:  5'- cGCGUGGUGGGcaguccGGCGCC--GCuGGCCa -3'
miRNA:   3'- aCGCAUCGUCU------UUGUGGcuCGcCCGG- -5'
14613 3' -55.7 NC_003521.1 + 64746 0.66 0.96301
Target:  5'- cGcCGUGGCcaAGACGCCGgccGGCGcGGCa -3'
miRNA:   3'- aC-GCAUCGucUUUGUGGC---UCGC-CCGg -5'
14613 3' -55.7 NC_003521.1 + 138455 0.66 0.955986
Target:  5'- cGCGU-GCAu---CGCCG-GCGGcGCCa -3'
miRNA:   3'- aCGCAuCGUcuuuGUGGCuCGCC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.