miRNA display CGI


Results 21 - 40 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14613 3' -55.7 NC_003521.1 + 56553 0.66 0.966211
Target:  5'- aGCGUAGC----ACACCcccGUGGGCUc -3'
miRNA:   3'- aCGCAUCGucuuUGUGGcu-CGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 215482 0.66 0.966211
Target:  5'- gGCGaaggccaggAGCAGGGACAaCGuGCcGGCCa -3'
miRNA:   3'- aCGCa--------UCGUCUUUGUgGCuCGcCCGG- -5'
14613 3' -55.7 NC_003521.1 + 32923 0.66 0.96301
Target:  5'- gGCGUAGguG--GCGCCGgAGagcccaaGGGCg -3'
miRNA:   3'- aCGCAUCguCuuUGUGGC-UCg------CCCGg -5'
14613 3' -55.7 NC_003521.1 + 76180 0.66 0.96301
Target:  5'- cGCGggccuGCGuGAGGCGCCacaGGaUGGGCCa -3'
miRNA:   3'- aCGCau---CGU-CUUUGUGGc--UC-GCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 112203 0.66 0.958182
Target:  5'- cGCGUguccgaAGCGGAGGCGCUGcucaaucagcaguGCGaGGUCg -3'
miRNA:   3'- aCGCA------UCGUCUUUGUGGCu------------CGC-CCGG- -5'
14613 3' -55.7 NC_003521.1 + 85227 0.66 0.959603
Target:  5'- cGCGccGGaCAGAGACAUgGGGCcGGCg -3'
miRNA:   3'- aCGCa-UC-GUCUUUGUGgCUCGcCCGg -5'
14613 3' -55.7 NC_003521.1 + 53326 0.66 0.959603
Target:  5'- cGCaGUAGguGAAGUACC-AGUugaaGGGCCa -3'
miRNA:   3'- aCG-CAUCguCUUUGUGGcUCG----CCCGG- -5'
14613 3' -55.7 NC_003521.1 + 165701 0.66 0.955986
Target:  5'- cGCcgaaAGCcGuc-CACCGuGCGGGCCa -3'
miRNA:   3'- aCGca--UCGuCuuuGUGGCuCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 33243 0.66 0.955986
Target:  5'- gGCGUugAGCuGgcACACgCGcAGCaGGCCg -3'
miRNA:   3'- aCGCA--UCGuCuuUGUG-GC-UCGcCCGG- -5'
14613 3' -55.7 NC_003521.1 + 43426 0.66 0.964315
Target:  5'- cUGCGUgcccgacgaggaggcGGCGGcgGCcCUGgaacucucacAGCGGGCCa -3'
miRNA:   3'- -ACGCA---------------UCGUCuuUGuGGC----------UCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 101723 0.66 0.959603
Target:  5'- aUGCGcGGCGGggGCgagauggggaagGCCG-GCaGGUCg -3'
miRNA:   3'- -ACGCaUCGUCuuUG------------UGGCuCGcCCGG- -5'
14613 3' -55.7 NC_003521.1 + 139360 0.66 0.959603
Target:  5'- gUGuUGUAGCAGcuggcgaaGAGCGCCGuGCucuuGGCCc -3'
miRNA:   3'- -AC-GCAUCGUC--------UUUGUGGCuCGc---CCGG- -5'
14613 3' -55.7 NC_003521.1 + 224010 0.66 0.966211
Target:  5'- cUGCGgcagcGGCGGGcccGGCGguCgGGGCGGGCg -3'
miRNA:   3'- -ACGCa----UCGUCU---UUGU--GgCUCGCCCGg -5'
14613 3' -55.7 NC_003521.1 + 181748 0.66 0.966211
Target:  5'- aGCGUAccGCAGAu-CACCaggGAGaaGGCCc -3'
miRNA:   3'- aCGCAU--CGUCUuuGUGG---CUCgcCCGG- -5'
14613 3' -55.7 NC_003521.1 + 110298 0.66 0.96301
Target:  5'- gGCGcAGCAcGAAguugucGCGCUGguAGgGGGCCu -3'
miRNA:   3'- aCGCaUCGU-CUU------UGUGGC--UCgCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 113863 0.66 0.964315
Target:  5'- aGCGUGGCGGugguguAAGCGCCGucacgugucgcccgcAGCauaaaGGGCg -3'
miRNA:   3'- aCGCAUCGUC------UUUGUGGC---------------UCG-----CCCGg -5'
14613 3' -55.7 NC_003521.1 + 220086 0.66 0.959603
Target:  5'- cGCGUAcacGCAGcugauGCACCGccAGCGGuaCg -3'
miRNA:   3'- aCGCAU---CGUCuu---UGUGGC--UCGCCcgG- -5'
14613 3' -55.7 NC_003521.1 + 35034 0.66 0.966211
Target:  5'- cGCGguugGGCAcgcucAUGCCGuGCGGcGCCa -3'
miRNA:   3'- aCGCa---UCGUcuu--UGUGGCuCGCC-CGG- -5'
14613 3' -55.7 NC_003521.1 + 144048 0.66 0.955986
Target:  5'- cUGCGgcGCuucuGcAugGCCGAGCuGGCg -3'
miRNA:   3'- -ACGCauCGu---CuUugUGGCUCGcCCGg -5'
14613 3' -55.7 NC_003521.1 + 131071 0.66 0.96301
Target:  5'- cGCgGUGGCGGcGACcgcgGCuCGcGCGGGCUc -3'
miRNA:   3'- aCG-CAUCGUCuUUG----UG-GCuCGCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.