miRNA display CGI


Results 21 - 40 of 341 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14613 3' -55.7 NC_003521.1 + 155475 0.74 0.60274
Target:  5'- gGgGUGagAGAGACGCCGgccugcGGCGGGCCg -3'
miRNA:   3'- aCgCAUcgUCUUUGUGGC------UCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 236191 0.74 0.60274
Target:  5'- gGgGUGGCAGGAAaGCCGAcggaGCGGGUg -3'
miRNA:   3'- aCgCAUCGUCUUUgUGGCU----CGCCCGg -5'
14613 3' -55.7 NC_003521.1 + 5477 0.74 0.616663
Target:  5'- cGCGUgcgacuuccagucccGGCAGAAACACCaGAgGCGGuguaGCCg -3'
miRNA:   3'- aCGCA---------------UCGUCUUUGUGG-CU-CGCC----CGG- -5'
14613 3' -55.7 NC_003521.1 + 38207 0.74 0.622638
Target:  5'- -aUGUAGCGGAcgauGGCGCCGAuGUagGGGCCg -3'
miRNA:   3'- acGCAUCGUCU----UUGUGGCU-CG--CCCGG- -5'
14613 3' -55.7 NC_003521.1 + 52670 0.74 0.632601
Target:  5'- aGCGgcAGCAGcgGCACCGgcagcgucGGCGGuGCCa -3'
miRNA:   3'- aCGCa-UCGUCuuUGUGGC--------UCGCC-CGG- -5'
14613 3' -55.7 NC_003521.1 + 78601 0.74 0.632601
Target:  5'- cGCGggaAGCGGAGagGCACCGAcuGCGcGGCUc -3'
miRNA:   3'- aCGCa--UCGUCUU--UGUGGCU--CGC-CCGG- -5'
14613 3' -55.7 NC_003521.1 + 168813 0.74 0.642564
Target:  5'- aGUGUGGUAGua--ACCGAgcGCGGGCUg -3'
miRNA:   3'- aCGCAUCGUCuuugUGGCU--CGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 106530 0.74 0.642564
Target:  5'- gGCGguuccCAGAAGCGCugaaagcgCGAGUGGGCCg -3'
miRNA:   3'- aCGCauc--GUCUUUGUG--------GCUCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 102291 0.73 0.652519
Target:  5'- aGCGcGGCaAGAAgucgagguGCGCCGgacccAGCGGGCCc -3'
miRNA:   3'- aCGCaUCG-UCUU--------UGUGGC-----UCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 136670 0.73 0.662458
Target:  5'- cGCGccgccgccGCAG-AGCACCGAgcaggGCGGGCCc -3'
miRNA:   3'- aCGCau------CGUCuUUGUGGCU-----CGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 207932 0.73 0.662458
Target:  5'- gGCGggcacGGCGGcAGCACCGGcggcGCGGGCg -3'
miRNA:   3'- aCGCa----UCGUCuUUGUGGCU----CGCCCGg -5'
14613 3' -55.7 NC_003521.1 + 166227 0.73 0.669402
Target:  5'- aGC-UGGUAGAAGagcgugaugccgccCGgCGAGCGGGCCg -3'
miRNA:   3'- aCGcAUCGUCUUU--------------GUgGCUCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 219253 0.73 0.671384
Target:  5'- aGCGccggguagAGCAGGgcccgcaggggcuGGCACaUGAGCGGGCCc -3'
miRNA:   3'- aCGCa-------UCGUCU-------------UUGUG-GCUCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 200503 0.73 0.672374
Target:  5'- gGCGgcGC----GCACCGAGCuGGCCa -3'
miRNA:   3'- aCGCauCGucuuUGUGGCUCGcCCGG- -5'
14613 3' -55.7 NC_003521.1 + 15299 0.73 0.68226
Target:  5'- cGCGUucgucgacGCGcGAcGGCGCCGAGCGGGUg -3'
miRNA:   3'- aCGCAu-------CGU-CU-UUGUGGCUCGCCCGg -5'
14613 3' -55.7 NC_003521.1 + 47402 0.73 0.692106
Target:  5'- cUGCGcgAGCGGAgcuggauguAGCAUCGcuCGGGCCa -3'
miRNA:   3'- -ACGCa-UCGUCU---------UUGUGGCucGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 103467 0.73 0.692106
Target:  5'- cGCGgauGCGGGAGgGCgGcuccAGCGGGCCc -3'
miRNA:   3'- aCGCau-CGUCUUUgUGgC----UCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 26465 0.73 0.692106
Target:  5'- gGCGUGGCcuGGGAGCACCGccuGCGcGCUc -3'
miRNA:   3'- aCGCAUCG--UCUUUGUGGCu--CGCcCGG- -5'
14613 3' -55.7 NC_003521.1 + 123435 0.73 0.692106
Target:  5'- gGCGggauaGGaCGGAGGCGCCGuAGCGGGgaCCg -3'
miRNA:   3'- aCGCa----UC-GUCUUUGUGGC-UCGCCC--GG- -5'
14613 3' -55.7 NC_003521.1 + 213632 0.73 0.701904
Target:  5'- cGCGcAGCAGGAugaaACACCaGAGCaGGGUg -3'
miRNA:   3'- aCGCaUCGUCUU----UGUGG-CUCG-CCCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.