miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14613 3' -55.7 NC_003521.1 + 221325 1.13 0.002802
Target:  5'- aUGCGUAGCAGAAACACCGAGCGGGCCa -3'
miRNA:   3'- -ACGCAUCGUCUUUGUGGCUCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 155641 0.78 0.398747
Target:  5'- gGUgGUAGCAGAAGCGCCGuGCuGGGUg -3'
miRNA:   3'- aCG-CAUCGUCUUUGUGGCuCG-CCCGg -5'
14613 3' -55.7 NC_003521.1 + 47555 0.78 0.398747
Target:  5'- aUGuCG-AGCGGGgaaGACGgCGAGCGGGCCa -3'
miRNA:   3'- -AC-GCaUCGUCU---UUGUgGCUCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 185731 0.78 0.415535
Target:  5'- gUGCGgAGguGAu-CGCCGAGCGGGUg -3'
miRNA:   3'- -ACGCaUCguCUuuGUGGCUCGCCCGg -5'
14613 3' -55.7 NC_003521.1 + 213023 0.78 0.432749
Target:  5'- gGCGccgGGCG--AGCcgGCCGAGCGGGCCg -3'
miRNA:   3'- aCGCa--UCGUcuUUG--UGGCUCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 91591 0.77 0.44151
Target:  5'- gGCGUAGUAGccGCGCCGcagcuucuuGUGGGCCu -3'
miRNA:   3'- aCGCAUCGUCuuUGUGGCu--------CGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 101908 0.77 0.459329
Target:  5'- aUGUagGGCAGgcGCACCGAGC-GGCCg -3'
miRNA:   3'- -ACGcaUCGUCuuUGUGGCUCGcCCGG- -5'
14613 3' -55.7 NC_003521.1 + 116684 0.77 0.468381
Target:  5'- aGCGgcGGCGGAGGCAgCGGcGCGGGCg -3'
miRNA:   3'- aCGCa-UCGUCUUUGUgGCU-CGCCCGg -5'
14613 3' -55.7 NC_003521.1 + 168545 0.77 0.468381
Target:  5'- aGCGcGGCGGcgGCGCUG-GCGGGCUg -3'
miRNA:   3'- aCGCaUCGUCuuUGUGGCuCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 196025 0.77 0.468381
Target:  5'- cUGCGUgagcaucugcAGCAGGuuguagAGCACCGGGCGgaaGGCCg -3'
miRNA:   3'- -ACGCA----------UCGUCU------UUGUGGCUCGC---CCGG- -5'
14613 3' -55.7 NC_003521.1 + 99708 0.77 0.477523
Target:  5'- cGCGggcGCAGAAGCugC--GCGGGCCg -3'
miRNA:   3'- aCGCau-CGUCUUUGugGcuCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 240646 0.77 0.486753
Target:  5'- gGCGU-GCAGGGAgGCCGAaGCGGcgGCCg -3'
miRNA:   3'- aCGCAuCGUCUUUgUGGCU-CGCC--CGG- -5'
14613 3' -55.7 NC_003521.1 + 97 0.77 0.486753
Target:  5'- gGCGU-GCAGGGAgGCCGAaGCGGcgGCCg -3'
miRNA:   3'- aCGCAuCGUCUUUgUGGCU-CGCC--CGG- -5'
14613 3' -55.7 NC_003521.1 + 40419 0.77 0.486753
Target:  5'- gGCGU-GCAGGGAgGCCGAaGCGGcgGCCg -3'
miRNA:   3'- aCGCAuCGUCUUUgUGGCU-CGCC--CGG- -5'
14613 3' -55.7 NC_003521.1 + 104796 0.76 0.524468
Target:  5'- gUGCGU-GCGGAAGCACCGcguGCaGGCg -3'
miRNA:   3'- -ACGCAuCGUCUUUGUGGCu--CGcCCGg -5'
14613 3' -55.7 NC_003521.1 + 228299 0.76 0.534074
Target:  5'- gGCGaAGUGGAAACGCCG-GCcGGCCu -3'
miRNA:   3'- aCGCaUCGUCUUUGUGGCuCGcCCGG- -5'
14613 3' -55.7 NC_003521.1 + 103752 0.75 0.573063
Target:  5'- aUGUaGUGGCGGAAgacagcagGgGCCGGGCGGuGCCu -3'
miRNA:   3'- -ACG-CAUCGUCUU--------UgUGGCUCGCC-CGG- -5'
14613 3' -55.7 NC_003521.1 + 228883 0.75 0.573063
Target:  5'- -aCGUcccAGCAGGAGCACC-AGcCGGGCCc -3'
miRNA:   3'- acGCA---UCGUCUUUGUGGcUC-GCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 76704 0.75 0.582924
Target:  5'- cGUGUAGCGGugGCACCG-GCGGcGgCa -3'
miRNA:   3'- aCGCAUCGUCuuUGUGGCuCGCC-CgG- -5'
14613 3' -55.7 NC_003521.1 + 61274 0.74 0.60274
Target:  5'- aGUGUcGCAGGGAggaaGCCGAGCGGGaCg -3'
miRNA:   3'- aCGCAuCGUCUUUg---UGGCUCGCCCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.