miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14613 3' -55.7 NC_003521.1 + 18744 0.72 0.721326
Target:  5'- -uCGUGGCGGcgguGGCGCCGA-CGGGUCg -3'
miRNA:   3'- acGCAUCGUCu---UUGUGGCUcGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 168813 0.74 0.642564
Target:  5'- aGUGUGGUAGua--ACCGAgcGCGGGCUg -3'
miRNA:   3'- aCGCAUCGUCuuugUGGCU--CGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 106530 0.74 0.642564
Target:  5'- gGCGguuccCAGAAGCGCugaaagcgCGAGUGGGCCg -3'
miRNA:   3'- aCGCauc--GUCUUUGUG--------GCUCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 136670 0.73 0.662458
Target:  5'- cGCGccgccgccGCAG-AGCACCGAgcaggGCGGGCCc -3'
miRNA:   3'- aCGCau------CGUCuUUGUGGCU-----CGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 166227 0.73 0.669402
Target:  5'- aGC-UGGUAGAAGagcgugaugccgccCGgCGAGCGGGCCg -3'
miRNA:   3'- aCGcAUCGUCUUU--------------GUgGCUCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 219253 0.73 0.671384
Target:  5'- aGCGccggguagAGCAGGgcccgcaggggcuGGCACaUGAGCGGGCCc -3'
miRNA:   3'- aCGCa-------UCGUCU-------------UUGUG-GCUCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 47402 0.73 0.692106
Target:  5'- cUGCGcgAGCGGAgcuggauguAGCAUCGcuCGGGCCa -3'
miRNA:   3'- -ACGCa-UCGUCU---------UUGUGGCucGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 166087 0.73 0.701904
Target:  5'- gGCcaUAGCGGGAGCggGCCGGcagguucacGCGGGCCu -3'
miRNA:   3'- aCGc-AUCGUCUUUG--UGGCU---------CGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 213632 0.73 0.701904
Target:  5'- cGCGcAGCAGGAugaaACACCaGAGCaGGGUg -3'
miRNA:   3'- aCGCaUCGUCUU----UGUGG-CUCG-CCCGg -5'
14613 3' -55.7 NC_003521.1 + 38207 0.74 0.622638
Target:  5'- -aUGUAGCGGAcgauGGCGCCGAuGUagGGGCCg -3'
miRNA:   3'- acGCAUCGUCU----UUGUGGCU-CG--CCCGG- -5'
14613 3' -55.7 NC_003521.1 + 76704 0.75 0.582924
Target:  5'- cGUGUAGCGGugGCACCG-GCGGcGgCa -3'
miRNA:   3'- aCGCAUCGUCuuUGUGGCuCGCC-CgG- -5'
14613 3' -55.7 NC_003521.1 + 228883 0.75 0.573063
Target:  5'- -aCGUcccAGCAGGAGCACC-AGcCGGGCCc -3'
miRNA:   3'- acGCA---UCGUCUUUGUGGcUC-GCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 155641 0.78 0.398747
Target:  5'- gGUgGUAGCAGAAGCGCCGuGCuGGGUg -3'
miRNA:   3'- aCG-CAUCGUCUUUGUGGCuCG-CCCGg -5'
14613 3' -55.7 NC_003521.1 + 47555 0.78 0.398747
Target:  5'- aUGuCG-AGCGGGgaaGACGgCGAGCGGGCCa -3'
miRNA:   3'- -AC-GCaUCGUCU---UUGUgGCUCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 213023 0.78 0.432749
Target:  5'- gGCGccgGGCG--AGCcgGCCGAGCGGGCCg -3'
miRNA:   3'- aCGCa--UCGUcuUUG--UGGCUCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 101908 0.77 0.459329
Target:  5'- aUGUagGGCAGgcGCACCGAGC-GGCCg -3'
miRNA:   3'- -ACGcaUCGUCuuUGUGGCUCGcCCGG- -5'
14613 3' -55.7 NC_003521.1 + 168545 0.77 0.468381
Target:  5'- aGCGcGGCGGcgGCGCUG-GCGGGCUg -3'
miRNA:   3'- aCGCaUCGUCuuUGUGGCuCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 97 0.77 0.486753
Target:  5'- gGCGU-GCAGGGAgGCCGAaGCGGcgGCCg -3'
miRNA:   3'- aCGCAuCGUCUUUgUGGCU-CGCC--CGG- -5'
14613 3' -55.7 NC_003521.1 + 240646 0.77 0.486753
Target:  5'- gGCGU-GCAGGGAgGCCGAaGCGGcgGCCg -3'
miRNA:   3'- aCGCAuCGUCUUUgUGGCU-CGCC--CGG- -5'
14613 3' -55.7 NC_003521.1 + 228299 0.76 0.534074
Target:  5'- gGCGaAGUGGAAACGCCG-GCcGGCCu -3'
miRNA:   3'- aCGCaUCGUCUUUGUGGCuCGcCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.