miRNA display CGI


Results 1 - 20 of 341 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14613 3' -55.7 NC_003521.1 + 185731 0.78 0.415535
Target:  5'- gUGCGgAGguGAu-CGCCGAGCGGGUg -3'
miRNA:   3'- -ACGCaUCguCUuuGUGGCUCGCCCGg -5'
14613 3' -55.7 NC_003521.1 + 15299 0.73 0.68226
Target:  5'- cGCGUucgucgacGCGcGAcGGCGCCGAGCGGGUg -3'
miRNA:   3'- aCGCAu-------CGU-CU-UUGUGGCUCGCCCGg -5'
14613 3' -55.7 NC_003521.1 + 103467 0.73 0.692106
Target:  5'- cGCGgauGCGGGAGgGCgGcuccAGCGGGCCc -3'
miRNA:   3'- aCGCau-CGUCUUUgUGgC----UCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 172071 0.66 0.969212
Target:  5'- cUGCGUcaggaccgucAGCGGcgGCGugaugaaguCCGuGCGGGCg -3'
miRNA:   3'- -ACGCA----------UCGUCuuUGU---------GGCuCGCCCGg -5'
14613 3' -55.7 NC_003521.1 + 99708 0.77 0.477523
Target:  5'- cGCGggcGCAGAAGCugC--GCGGGCCg -3'
miRNA:   3'- aCGCau-CGUCUUUGugGcuCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 40419 0.77 0.486753
Target:  5'- gGCGU-GCAGGGAgGCCGAaGCGGcgGCCg -3'
miRNA:   3'- aCGCAuCGUCUUUgUGGCU-CGCC--CGG- -5'
14613 3' -55.7 NC_003521.1 + 103752 0.75 0.573063
Target:  5'- aUGUaGUGGCGGAAgacagcagGgGCCGGGCGGuGCCu -3'
miRNA:   3'- -ACG-CAUCGUCUU--------UgUGGCUCGCC-CGG- -5'
14613 3' -55.7 NC_003521.1 + 61274 0.74 0.60274
Target:  5'- aGUGUcGCAGGGAggaaGCCGAGCGGGaCg -3'
miRNA:   3'- aCGCAuCGUCUUUg---UGGCUCGCCCgG- -5'
14613 3' -55.7 NC_003521.1 + 5477 0.74 0.616663
Target:  5'- cGCGUgcgacuuccagucccGGCAGAAACACCaGAgGCGGuguaGCCg -3'
miRNA:   3'- aCGCA---------------UCGUCUUUGUGG-CU-CGCC----CGG- -5'
14613 3' -55.7 NC_003521.1 + 200503 0.73 0.672374
Target:  5'- gGCGgcGC----GCACCGAGCuGGCCa -3'
miRNA:   3'- aCGCauCGucuuUGUGGCUCGcCCGG- -5'
14613 3' -55.7 NC_003521.1 + 78601 0.74 0.632601
Target:  5'- cGCGggaAGCGGAGagGCACCGAcuGCGcGGCUc -3'
miRNA:   3'- aCGCa--UCGUCUU--UGUGGCU--CGC-CCGG- -5'
14613 3' -55.7 NC_003521.1 + 155475 0.74 0.60274
Target:  5'- gGgGUGagAGAGACGCCGgccugcGGCGGGCCg -3'
miRNA:   3'- aCgCAUcgUCUUUGUGGC------UCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 91591 0.77 0.44151
Target:  5'- gGCGUAGUAGccGCGCCGcagcuucuuGUGGGCCu -3'
miRNA:   3'- aCGCAUCGUCuuUGUGGCu--------CGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 102291 0.73 0.652519
Target:  5'- aGCGcGGCaAGAAgucgagguGCGCCGgacccAGCGGGCCc -3'
miRNA:   3'- aCGCaUCG-UCUU--------UGUGGC-----UCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 116684 0.77 0.468381
Target:  5'- aGCGgcGGCGGAGGCAgCGGcGCGGGCg -3'
miRNA:   3'- aCGCa-UCGUCUUUGUgGCU-CGCCCGg -5'
14613 3' -55.7 NC_003521.1 + 236191 0.74 0.60274
Target:  5'- gGgGUGGCAGGAAaGCCGAcggaGCGGGUg -3'
miRNA:   3'- aCgCAUCGUCUUUgUGGCU----CGCCCGg -5'
14613 3' -55.7 NC_003521.1 + 207932 0.73 0.662458
Target:  5'- gGCGggcacGGCGGcAGCACCGGcggcGCGGGCg -3'
miRNA:   3'- aCGCa----UCGUCuUUGUGGCU----CGCCCGg -5'
14613 3' -55.7 NC_003521.1 + 26465 0.73 0.692106
Target:  5'- gGCGUGGCcuGGGAGCACCGccuGCGcGCUc -3'
miRNA:   3'- aCGCAUCG--UCUUUGUGGCu--CGCcCGG- -5'
14613 3' -55.7 NC_003521.1 + 196025 0.77 0.468381
Target:  5'- cUGCGUgagcaucugcAGCAGGuuguagAGCACCGGGCGgaaGGCCg -3'
miRNA:   3'- -ACGCA----------UCGUCU------UUGUGGCUCGC---CCGG- -5'
14613 3' -55.7 NC_003521.1 + 104796 0.76 0.524468
Target:  5'- gUGCGU-GCGGAAGCACCGcguGCaGGCg -3'
miRNA:   3'- -ACGCAuCGUCUUUGUGGCu--CGcCCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.