miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14613 3' -55.7 NC_003521.1 + 139360 0.66 0.959603
Target:  5'- gUGuUGUAGCAGcuggcgaaGAGCGCCGuGCucuuGGCCc -3'
miRNA:   3'- -AC-GCAUCGUC--------UUUGUGGCuCGc---CCGG- -5'
14613 3' -55.7 NC_003521.1 + 59001 0.66 0.960991
Target:  5'- gGCGUGGUAGAggUagcgaACCGAuauaguauuuaccucGCGcuuGGCCu -3'
miRNA:   3'- aCGCAUCGUCUuuG-----UGGCU---------------CGC---CCGG- -5'
14613 3' -55.7 NC_003521.1 + 153617 0.66 0.955986
Target:  5'- gGCGcucAGCAGcuccuGCGCC-AGCGGGUg -3'
miRNA:   3'- aCGCa--UCGUCuu---UGUGGcUCGCCCGg -5'
14613 3' -55.7 NC_003521.1 + 138455 0.66 0.955986
Target:  5'- cGCGU-GCAu---CGCCG-GCGGcGCCa -3'
miRNA:   3'- aCGCAuCGUcuuuGUGGCuCGCC-CGG- -5'
14613 3' -55.7 NC_003521.1 + 115826 0.66 0.952155
Target:  5'- cGgGUGGCucAGcAGGCGCUGgcucaGGCGGGCg -3'
miRNA:   3'- aCgCAUCG--UC-UUUGUGGC-----UCGCCCGg -5'
14613 3' -55.7 NC_003521.1 + 33243 0.66 0.955986
Target:  5'- gGCGUugAGCuGgcACACgCGcAGCaGGCCg -3'
miRNA:   3'- aCGCA--UCGuCuuUGUG-GC-UCGcCCGG- -5'
14613 3' -55.7 NC_003521.1 + 165701 0.66 0.955986
Target:  5'- cGCcgaaAGCcGuc-CACCGuGCGGGCCa -3'
miRNA:   3'- aCGca--UCGuCuuuGUGGCuCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 112203 0.66 0.958182
Target:  5'- cGCGUguccgaAGCGGAGGCGCUGcucaaucagcaguGCGaGGUCg -3'
miRNA:   3'- aCGCA------UCGUCUUUGUGGCu------------CGC-CCGG- -5'
14613 3' -55.7 NC_003521.1 + 85227 0.66 0.959603
Target:  5'- cGCGccGGaCAGAGACAUgGGGCcGGCg -3'
miRNA:   3'- aCGCa-UC-GUCUUUGUGgCUCGcCCGg -5'
14613 3' -55.7 NC_003521.1 + 32719 0.66 0.955986
Target:  5'- aGgGUGGgGGGuuggcGACGCCaccAGCGGGCg -3'
miRNA:   3'- aCgCAUCgUCU-----UUGUGGc--UCGCCCGg -5'
14613 3' -55.7 NC_003521.1 + 67564 0.66 0.952155
Target:  5'- cUGUGUcaGGCGGc-GgGCCccGCGGGCCa -3'
miRNA:   3'- -ACGCA--UCGUCuuUgUGGcuCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 53326 0.66 0.959603
Target:  5'- cGCaGUAGguGAAGUACC-AGUugaaGGGCCa -3'
miRNA:   3'- aCG-CAUCguCUUUGUGGcUCG----CCCGG- -5'
14613 3' -55.7 NC_003521.1 + 172071 0.66 0.969212
Target:  5'- cUGCGUcaggaccgucAGCGGcgGCGugaugaaguCCGuGCGGGCg -3'
miRNA:   3'- -ACGCA----------UCGUCuuUGU---------GGCuCGCCCGg -5'
14613 3' -55.7 NC_003521.1 + 102018 0.66 0.952155
Target:  5'- gGCGUGGUu-GAGCACC---UGGGCCa -3'
miRNA:   3'- aCGCAUCGucUUUGUGGcucGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 102573 0.66 0.952155
Target:  5'- cGUGUAGUAG-AACugCGucucggggcuGGCGcuGGCCa -3'
miRNA:   3'- aCGCAUCGUCuUUGugGC----------UCGC--CCGG- -5'
14613 3' -55.7 NC_003521.1 + 101723 0.66 0.959603
Target:  5'- aUGCGcGGCGGggGCgagauggggaagGCCG-GCaGGUCg -3'
miRNA:   3'- -ACGCaUCGUCuuUG------------UGGCuCGcCCGG- -5'
14613 3' -55.7 NC_003521.1 + 220086 0.66 0.959603
Target:  5'- cGCGUAcacGCAGcugauGCACCGccAGCGGuaCg -3'
miRNA:   3'- aCGCAU---CGUCuu---UGUGGC--UCGCCcgG- -5'
14613 3' -55.7 NC_003521.1 + 30796 0.66 0.952155
Target:  5'- gGCGcGGUAGc-GCACCGA--GGGCCc -3'
miRNA:   3'- aCGCaUCGUCuuUGUGGCUcgCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 144048 0.66 0.955986
Target:  5'- cUGCGgcGCuucuGcAugGCCGAGCuGGCg -3'
miRNA:   3'- -ACGCauCGu---CuUugUGGCUCGcCCGg -5'
14613 3' -55.7 NC_003521.1 + 148425 0.66 0.952155
Target:  5'- gUGCG-GGCGGccGCGCCG-GCGGcuccaggggugGCCg -3'
miRNA:   3'- -ACGCaUCGUCuuUGUGGCuCGCC-----------CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.