miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14613 3' -55.7 NC_003521.1 + 77 0.66 0.966211
Target:  5'- gGCGUgcGGCGGGccggccggucgGACguguuucggGCCG-GCGGGUCg -3'
miRNA:   3'- aCGCA--UCGUCU-----------UUG---------UGGCuCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 97 0.77 0.486753
Target:  5'- gGCGU-GCAGGGAgGCCGAaGCGGcgGCCg -3'
miRNA:   3'- aCGCAuCGUCUUUgUGGCU-CGCC--CGG- -5'
14613 3' -55.7 NC_003521.1 + 1353 0.66 0.96301
Target:  5'- gGCuggGGCuGAAcGCGCC--GCGGGCCa -3'
miRNA:   3'- aCGca-UCGuCUU-UGUGGcuCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 1839 0.69 0.888785
Target:  5'- aGCaUGGCGGAcGACagACCGGGacgGGGCCc -3'
miRNA:   3'- aCGcAUCGUCU-UUG--UGGCUCg--CCCGG- -5'
14613 3' -55.7 NC_003521.1 + 1888 0.69 0.888785
Target:  5'- aGCuGgcGCAGG--UACCGGGaCGGGCUu -3'
miRNA:   3'- aCG-CauCGUCUuuGUGGCUC-GCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 3185 0.67 0.939346
Target:  5'- cUGCGUGGCgacaagggcaacAGcAAC-CCGAGCGGuGUg -3'
miRNA:   3'- -ACGCAUCG------------UCuUUGuGGCUCGCC-CGg -5'
14613 3' -55.7 NC_003521.1 + 4126 0.68 0.901584
Target:  5'- ----aGGguGGGAUACgGgAGCGGGCCg -3'
miRNA:   3'- acgcaUCguCUUUGUGgC-UCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 5477 0.74 0.616663
Target:  5'- cGCGUgcgacuuccagucccGGCAGAAACACCaGAgGCGGuguaGCCg -3'
miRNA:   3'- aCGCA---------------UCGUCUUUGUGG-CU-CGCC----CGG- -5'
14613 3' -55.7 NC_003521.1 + 6278 0.68 0.924517
Target:  5'- aUGaCGUAGguGAAGaucCACaGAGCGacGGCCa -3'
miRNA:   3'- -AC-GCAUCguCUUU---GUGgCUCGC--CCGG- -5'
14613 3' -55.7 NC_003521.1 + 11595 0.66 0.96301
Target:  5'- cGCGgcccGCGGGucCACUG-GCGGGUa -3'
miRNA:   3'- aCGCau--CGUCUuuGUGGCuCGCCCGg -5'
14613 3' -55.7 NC_003521.1 + 12853 0.72 0.721326
Target:  5'- gUGCGcgAGCAGAcGCAgCGGuaCGGGCCu -3'
miRNA:   3'- -ACGCa-UCGUCUuUGUgGCUc-GCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 13169 0.68 0.919122
Target:  5'- cGCGUacaGGCGGGuccugaccaGGCguGCCGcuCGGGCCg -3'
miRNA:   3'- aCGCA---UCGUCU---------UUG--UGGCucGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 13855 0.69 0.888785
Target:  5'- -uCGgcGCGGggGucuCugCGGGCGGcGCCg -3'
miRNA:   3'- acGCauCGUCuuU---GugGCUCGCC-CGG- -5'
14613 3' -55.7 NC_003521.1 + 15231 0.67 0.94769
Target:  5'- gGCGgccgAGCGcGAGGcCGCCGAGCgccaggacgacacGGGUCc -3'
miRNA:   3'- aCGCa---UCGU-CUUU-GUGGCUCG-------------CCCGG- -5'
14613 3' -55.7 NC_003521.1 + 15299 0.73 0.68226
Target:  5'- cGCGUucgucgacGCGcGAcGGCGCCGAGCGGGUg -3'
miRNA:   3'- aCGCAu-------CGU-CU-UUGUGGCUCGCCCGg -5'
14613 3' -55.7 NC_003521.1 + 16100 0.66 0.955986
Target:  5'- cUGCGUcGGCG--AGCACCacGGGCGGGaCg -3'
miRNA:   3'- -ACGCA-UCGUcuUUGUGG--CUCGCCCgG- -5'
14613 3' -55.7 NC_003521.1 + 17464 0.67 0.943838
Target:  5'- aGCGcucggAGgAGAGacgacgGCACCGguAGCGGcGCCg -3'
miRNA:   3'- aCGCa----UCgUCUU------UGUGGC--UCGCC-CGG- -5'
14613 3' -55.7 NC_003521.1 + 18716 0.7 0.829399
Target:  5'- gGCGcAGCGccucGAGACGCUgccggcgcugcaGGGCGGGCUg -3'
miRNA:   3'- aCGCaUCGU----CUUUGUGG------------CUCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 18744 0.72 0.721326
Target:  5'- -uCGUGGCGGcgguGGCGCCGA-CGGGUCg -3'
miRNA:   3'- acGCAUCGUCu---UUGUGGCUcGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 19738 0.71 0.768462
Target:  5'- aGCGUGGCGGuGACGgCGu-CGGGCUu -3'
miRNA:   3'- aCGCAUCGUCuUUGUgGCucGCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.