miRNA display CGI


Results 21 - 40 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14613 3' -55.7 NC_003521.1 + 24195 0.7 0.824466
Target:  5'- gGCGgcaugGGCGGAAcgucguccaacagcaGCACC-AGCGGGUUg -3'
miRNA:   3'- aCGCa----UCGUCUU---------------UGUGGcUCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 24429 0.68 0.919122
Target:  5'- aGaCGgcGCAGGG--GCCG-GCGGGCUc -3'
miRNA:   3'- aC-GCauCGUCUUugUGGCuCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 25640 0.67 0.929686
Target:  5'- aGUGaUAGCGGAGcAUACCGuGUGuGGCg -3'
miRNA:   3'- aCGC-AUCGUCUU-UGUGGCuCGC-CCGg -5'
14613 3' -55.7 NC_003521.1 + 26465 0.73 0.692106
Target:  5'- gGCGUGGCcuGGGAGCACCGccuGCGcGCUc -3'
miRNA:   3'- aCGCAUCG--UCUUUGUGGCu--CGCcCGG- -5'
14613 3' -55.7 NC_003521.1 + 27959 0.7 0.821144
Target:  5'- cGCG--GUAGAAACGCCaGGCGGcGCUc -3'
miRNA:   3'- aCGCauCGUCUUUGUGGcUCGCC-CGG- -5'
14613 3' -55.7 NC_003521.1 + 28382 0.68 0.9135
Target:  5'- gGCGUGGCAcGugucgcGACGCCuGGCcaucauGGGCCu -3'
miRNA:   3'- aCGCAUCGU-Cu-----UUGUGGcUCG------CCCGG- -5'
14613 3' -55.7 NC_003521.1 + 28719 0.69 0.888123
Target:  5'- gUGCGccagaUGGUGGcgcACGCCGAcaaccagacgcgcGCGGGCCg -3'
miRNA:   3'- -ACGC-----AUCGUCuu-UGUGGCU-------------CGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 30263 0.67 0.948107
Target:  5'- cGUGgcGCAGcuGAC-CCuGGCGGGCg -3'
miRNA:   3'- aCGCauCGUCu-UUGuGGcUCGCCCGg -5'
14613 3' -55.7 NC_003521.1 + 30796 0.66 0.952155
Target:  5'- gGCGcGGUAGc-GCACCGA--GGGCCc -3'
miRNA:   3'- aCGCaUCGUCuuUGUGGCUcgCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 32719 0.66 0.955986
Target:  5'- aGgGUGGgGGGuuggcGACGCCaccAGCGGGCg -3'
miRNA:   3'- aCgCAUCgUCU-----UUGUGGc--UCGCCCGg -5'
14613 3' -55.7 NC_003521.1 + 32923 0.66 0.96301
Target:  5'- gGCGUAGguG--GCGCCGgAGagcccaaGGGCg -3'
miRNA:   3'- aCGCAUCguCuuUGUGGC-UCg------CCCGg -5'
14613 3' -55.7 NC_003521.1 + 33243 0.66 0.955986
Target:  5'- gGCGUugAGCuGgcACACgCGcAGCaGGCCg -3'
miRNA:   3'- aCGCA--UCGuCuuUGUG-GC-UCGcCCGG- -5'
14613 3' -55.7 NC_003521.1 + 34427 0.67 0.94769
Target:  5'- gGCGUcGCGGugcgacuccacguAGGCGCU--GCGGGCCu -3'
miRNA:   3'- aCGCAuCGUC-------------UUUGUGGcuCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 34492 0.72 0.753641
Target:  5'- cGCGgaAGCAG-AGCAgCGAgcgcagguagcggccGCGGGCCg -3'
miRNA:   3'- aCGCa-UCGUCuUUGUgGCU---------------CGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 35034 0.66 0.966211
Target:  5'- cGCGguugGGCAcgcucAUGCCGuGCGGcGCCa -3'
miRNA:   3'- aCGCa---UCGUcuu--UGUGGCuCGCC-CGG- -5'
14613 3' -55.7 NC_003521.1 + 35809 0.71 0.768462
Target:  5'- gGCGUcGCGGc-ACGCCGucguuAGCGGGUCu -3'
miRNA:   3'- aCGCAuCGUCuuUGUGGC-----UCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 36287 0.68 0.895293
Target:  5'- -cCGUaAGCAGAAAaacgagGCCGGGUGGGgCg -3'
miRNA:   3'- acGCA-UCGUCUUUg-----UGGCUCGCCCgG- -5'
14613 3' -55.7 NC_003521.1 + 36778 0.67 0.929686
Target:  5'- gGCGacUGGCAGGGcCACgCGcuGCGGaGCCg -3'
miRNA:   3'- aCGC--AUCGUCUUuGUG-GCu-CGCC-CGG- -5'
14613 3' -55.7 NC_003521.1 + 36790 0.71 0.795431
Target:  5'- gGCGUGGaGGAcGCGCCuuucGGGCaGGCCg -3'
miRNA:   3'- aCGCAUCgUCUuUGUGG----CUCGcCCGG- -5'
14613 3' -55.7 NC_003521.1 + 36847 0.7 0.821144
Target:  5'- cUGUGccgGGUAG-AGCACCuGAcGUGGGCCg -3'
miRNA:   3'- -ACGCa--UCGUCuUUGUGG-CU-CGCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.