miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14613 3' -55.7 NC_003521.1 + 240646 0.77 0.486753
Target:  5'- gGCGU-GCAGGGAgGCCGAaGCGGcgGCCg -3'
miRNA:   3'- aCGCAuCGUCUUUgUGGCU-CGCC--CGG- -5'
14613 3' -55.7 NC_003521.1 + 240626 0.66 0.966211
Target:  5'- gGCGUgcGGCGGGccggccggucgGACguguuucggGCCG-GCGGGUCg -3'
miRNA:   3'- aCGCA--UCGUCU-----------UUG---------UGGCuCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 240029 0.7 0.845393
Target:  5'- gGCucGGC-GggGCGCCGGGCGGuCCu -3'
miRNA:   3'- aCGcaUCGuCuuUGUGGCUCGCCcGG- -5'
14613 3' -55.7 NC_003521.1 + 239261 0.66 0.966211
Target:  5'- aGCGacGGCGGGuguGGCGCCGAGgCGaacGGCUc -3'
miRNA:   3'- aCGCa-UCGUCU---UUGUGGCUC-GC---CCGG- -5'
14613 3' -55.7 NC_003521.1 + 238473 0.68 0.895293
Target:  5'- gGCGgGGCGGAGACGCgGcccaGGGUCa -3'
miRNA:   3'- aCGCaUCGUCUUUGUGgCucg-CCCGG- -5'
14613 3' -55.7 NC_003521.1 + 236191 0.74 0.60274
Target:  5'- gGgGUGGCAGGAAaGCCGAcggaGCGGGUg -3'
miRNA:   3'- aCgCAUCGUCUUUgUGGCU----CGCCCGg -5'
14613 3' -55.7 NC_003521.1 + 234734 0.68 0.919122
Target:  5'- aGcCGUGGCGG-AACGCCGccGCaccGGCCg -3'
miRNA:   3'- aC-GCAUCGUCuUUGUGGCu-CGc--CCGG- -5'
14613 3' -55.7 NC_003521.1 + 233429 0.69 0.87513
Target:  5'- uUGCGUGGguuuGugGCCGGGCaGGGCg -3'
miRNA:   3'- -ACGCAUCgucuUugUGGCUCG-CCCGg -5'
14613 3' -55.7 NC_003521.1 + 232374 0.66 0.966211
Target:  5'- cGCGaAGCGGAGGucCACCGucucGCGcuGGCUg -3'
miRNA:   3'- aCGCaUCGUCUUU--GUGGCu---CGC--CCGG- -5'
14613 3' -55.7 NC_003521.1 + 229454 0.66 0.955986
Target:  5'- -uUGUAGUAGAcACAUggcgUGGGCGGGUUa -3'
miRNA:   3'- acGCAUCGUCUuUGUG----GCUCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 229207 0.67 0.936543
Target:  5'- cGCGuUGGguGAGAUugCGauAcccgccaguggacccGCGGGCCg -3'
miRNA:   3'- aCGC-AUCguCUUUGugGC--U---------------CGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 228883 0.75 0.573063
Target:  5'- -aCGUcccAGCAGGAGCACC-AGcCGGGCCc -3'
miRNA:   3'- acGCA---UCGUCUUUGUGGcUC-GCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 228595 0.66 0.966211
Target:  5'- gGCGUGcccGCAG-AGCA-UGAG-GGGCCg -3'
miRNA:   3'- aCGCAU---CGUCuUUGUgGCUCgCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 228299 0.76 0.534074
Target:  5'- gGCGaAGUGGAAACGCCG-GCcGGCCu -3'
miRNA:   3'- aCGCaUCGUCUUUGUGGCuCGcCCGG- -5'
14613 3' -55.7 NC_003521.1 + 228002 0.67 0.943838
Target:  5'- gGCGUAGguGGc-CACCaGGuuGGCCa -3'
miRNA:   3'- aCGCAUCguCUuuGUGGcUCgcCCGG- -5'
14613 3' -55.7 NC_003521.1 + 227598 0.66 0.966211
Target:  5'- gGCaUGGCAGGcuugGGCGCCG-GUcGGCCc -3'
miRNA:   3'- aCGcAUCGUCU----UUGUGGCuCGcCCGG- -5'
14613 3' -55.7 NC_003521.1 + 226879 0.66 0.969212
Target:  5'- aGCGagggcagcuGCGGggGCACCacggcggccAGCGcGGCCu -3'
miRNA:   3'- aCGCau-------CGUCuuUGUGGc--------UCGC-CCGG- -5'
14613 3' -55.7 NC_003521.1 + 226367 0.72 0.740458
Target:  5'- cGCGggAGCGGcggcuGACGCCGccGCaGGGCCg -3'
miRNA:   3'- aCGCa-UCGUCu----UUGUGGCu-CG-CCCGG- -5'
14613 3' -55.7 NC_003521.1 + 224010 0.66 0.966211
Target:  5'- cUGCGgcagcGGCGGGcccGGCGguCgGGGCGGGCg -3'
miRNA:   3'- -ACGCa----UCGUCU---UUGU--GgCUCGCCCGg -5'
14613 3' -55.7 NC_003521.1 + 223697 0.67 0.948107
Target:  5'- cGCGccGGCAGGAucgacgaccuCGCCGgguacgacGGCGGGUCc -3'
miRNA:   3'- aCGCa-UCGUCUUu---------GUGGC--------UCGCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.