miRNA display CGI


Results 21 - 40 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14613 3' -55.7 NC_003521.1 + 140893 0.66 0.968333
Target:  5'- cUGCGU-GCGGGAuuacgcccugcgcaACGCCGAucGCGucaccuacgacGGCCa -3'
miRNA:   3'- -ACGCAuCGUCUU--------------UGUGGCU--CGC-----------CCGG- -5'
14613 3' -55.7 NC_003521.1 + 196368 0.66 0.96652
Target:  5'- gUGCGUGGCGuuguacucgcauCGCCGAGCcgccgucacgauGGGCg -3'
miRNA:   3'- -ACGCAUCGUcuuu--------GUGGCUCG------------CCCGg -5'
14613 3' -55.7 NC_003521.1 + 58829 0.66 0.966211
Target:  5'- cGCGUGGCGGccguGACguuACUGGcGCGGauGCCc -3'
miRNA:   3'- aCGCAUCGUCu---UUG---UGGCU-CGCC--CGG- -5'
14613 3' -55.7 NC_003521.1 + 215482 0.66 0.966211
Target:  5'- gGCGaaggccaggAGCAGGGACAaCGuGCcGGCCa -3'
miRNA:   3'- aCGCa--------UCGUCUUUGUgGCuCGcCCGG- -5'
14613 3' -55.7 NC_003521.1 + 227598 0.66 0.966211
Target:  5'- gGCaUGGCAGGcuugGGCGCCG-GUcGGCCc -3'
miRNA:   3'- aCGcAUCGUCU----UUGUGGCuCGcCCGG- -5'
14613 3' -55.7 NC_003521.1 + 224010 0.66 0.966211
Target:  5'- cUGCGgcagcGGCGGGcccGGCGguCgGGGCGGGCg -3'
miRNA:   3'- -ACGCa----UCGUCU---UUGU--GgCUCGCCCGg -5'
14613 3' -55.7 NC_003521.1 + 35034 0.66 0.966211
Target:  5'- cGCGguugGGCAcgcucAUGCCGuGCGGcGCCa -3'
miRNA:   3'- aCGCa---UCGUcuu--UGUGGCuCGCC-CGG- -5'
14613 3' -55.7 NC_003521.1 + 228595 0.66 0.966211
Target:  5'- gGCGUGcccGCAG-AGCA-UGAG-GGGCCg -3'
miRNA:   3'- aCGCAU---CGUCuUUGUgGCUCgCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 183684 0.66 0.966211
Target:  5'- cGCGUGGCcGAcGAgACCuaucgcuucgugGAGCuGGCCg -3'
miRNA:   3'- aCGCAUCGuCU-UUgUGG------------CUCGcCCGG- -5'
14613 3' -55.7 NC_003521.1 + 240626 0.66 0.966211
Target:  5'- gGCGUgcGGCGGGccggccggucgGACguguuucggGCCG-GCGGGUCg -3'
miRNA:   3'- aCGCA--UCGUCU-----------UUG---------UGGCuCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 181748 0.66 0.966211
Target:  5'- aGCGUAccGCAGAu-CACCaggGAGaaGGCCc -3'
miRNA:   3'- aCGCAU--CGUCUuuGUGG---CUCgcCCGG- -5'
14613 3' -55.7 NC_003521.1 + 39033 0.66 0.966211
Target:  5'- aGCGacGGCGGGuguGGCGCCGAGgCGaacGGCUc -3'
miRNA:   3'- aCGCa-UCGUCU---UUGUGGCUC-GC---CCGG- -5'
14613 3' -55.7 NC_003521.1 + 239261 0.66 0.966211
Target:  5'- aGCGacGGCGGGuguGGCGCCGAGgCGaacGGCUc -3'
miRNA:   3'- aCGCa-UCGUCU---UUGUGGCUC-GC---CCGG- -5'
14613 3' -55.7 NC_003521.1 + 77 0.66 0.966211
Target:  5'- gGCGUgcGGCGGGccggccggucgGACguguuucggGCCG-GCGGGUCg -3'
miRNA:   3'- aCGCA--UCGUCU-----------UUG---------UGGCuCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 63217 0.66 0.966211
Target:  5'- cGCGgauuccggcAGCGGAAcgGCCGgaaccGGCGGcGCCg -3'
miRNA:   3'- aCGCa--------UCGUCUUugUGGC-----UCGCC-CGG- -5'
14613 3' -55.7 NC_003521.1 + 214790 0.66 0.966211
Target:  5'- cUGgGUGGCcGAGugcuuCACCGAGUuucugcacauGGGUCu -3'
miRNA:   3'- -ACgCAUCGuCUUu----GUGGCUCG----------CCCGG- -5'
14613 3' -55.7 NC_003521.1 + 95098 0.66 0.966211
Target:  5'- gGCGccuugAGCGGccGCGCgcgcuUGAGCGuGGCCu -3'
miRNA:   3'- aCGCa----UCGUCuuUGUG-----GCUCGC-CCGG- -5'
14613 3' -55.7 NC_003521.1 + 232374 0.66 0.966211
Target:  5'- cGCGaAGCGGAGGucCACCGucucGCGcuGGCUg -3'
miRNA:   3'- aCGCaUCGUCUUU--GUGGCu---CGC--CCGG- -5'
14613 3' -55.7 NC_003521.1 + 177392 0.66 0.966211
Target:  5'- cGCGaucGGC-GAuAUACgCG-GCGGGCCg -3'
miRNA:   3'- aCGCa--UCGuCUuUGUG-GCuCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 56553 0.66 0.966211
Target:  5'- aGCGUAGC----ACACCcccGUGGGCUc -3'
miRNA:   3'- aCGCAUCGucuuUGUGGcu-CGCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.