miRNA display CGI


Results 41 - 60 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14613 3' -55.7 NC_003521.1 + 200305 0.66 0.966211
Target:  5'- gGCGUgcGGCGGGccggccggucgGACguguuucggGCCG-GCGGGUCg -3'
miRNA:   3'- aCGCA--UCGUCU-----------UUG---------UGGCuCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 113863 0.66 0.964315
Target:  5'- aGCGUGGCGGugguguAAGCGCCGucacgugucgcccgcAGCauaaaGGGCg -3'
miRNA:   3'- aCGCAUCGUC------UUUGUGGC---------------UCG-----CCCGg -5'
14613 3' -55.7 NC_003521.1 + 43426 0.66 0.964315
Target:  5'- cUGCGUgcccgacgaggaggcGGCGGcgGCcCUGgaacucucacAGCGGGCCa -3'
miRNA:   3'- -ACGCA---------------UCGUCuuUGuGGC----------UCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 44313 0.66 0.964315
Target:  5'- uUGCuGUGGCcgcugcgggacgAGAGACA-CGAGCcugaggaggcggaacGGGCCg -3'
miRNA:   3'- -ACG-CAUCG------------UCUUUGUgGCUCG---------------CCCGG- -5'
14613 3' -55.7 NC_003521.1 + 131071 0.66 0.96301
Target:  5'- cGCgGUGGCGGcGACcgcgGCuCGcGCGGGCUc -3'
miRNA:   3'- aCG-CAUCGUCuUUG----UG-GCuCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 110298 0.66 0.96301
Target:  5'- gGCGcAGCAcGAAguugucGCGCUGguAGgGGGCCu -3'
miRNA:   3'- aCGCaUCGU-CUU------UGUGGC--UCgCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 120344 0.66 0.96301
Target:  5'- cGCGccucucGGCGGAGACACCu-GCGGacGUCg -3'
miRNA:   3'- aCGCa-----UCGUCUUUGUGGcuCGCC--CGG- -5'
14613 3' -55.7 NC_003521.1 + 1353 0.66 0.96301
Target:  5'- gGCuggGGCuGAAcGCGCC--GCGGGCCa -3'
miRNA:   3'- aCGca-UCGuCUU-UGUGGcuCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 171614 0.66 0.96301
Target:  5'- aGCGgcGGCGGGAGugcCGCCGAcGuCGGGUa -3'
miRNA:   3'- aCGCa-UCGUCUUU---GUGGCU-C-GCCCGg -5'
14613 3' -55.7 NC_003521.1 + 11595 0.66 0.96301
Target:  5'- cGCGgcccGCGGGucCACUG-GCGGGUa -3'
miRNA:   3'- aCGCau--CGUCUuuGUGGCuCGCCCGg -5'
14613 3' -55.7 NC_003521.1 + 32923 0.66 0.96301
Target:  5'- gGCGUAGguG--GCGCCGgAGagcccaaGGGCg -3'
miRNA:   3'- aCGCAUCguCuuUGUGGC-UCg------CCCGg -5'
14613 3' -55.7 NC_003521.1 + 118930 0.66 0.96301
Target:  5'- gGCGUgGGCGGcgGCGucCCGucaGGGCCa -3'
miRNA:   3'- aCGCA-UCGUCuuUGU--GGCucgCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 180219 0.66 0.96301
Target:  5'- gGCGUuGguGGugcCGCgCGuGUGGGCCu -3'
miRNA:   3'- aCGCAuCguCUuu-GUG-GCuCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 76180 0.66 0.96301
Target:  5'- cGCGggccuGCGuGAGGCGCCacaGGaUGGGCCa -3'
miRNA:   3'- aCGCau---CGU-CUUUGUGGc--UC-GCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 129218 0.66 0.96301
Target:  5'- cGCGUGGUGGGcaguccGGCGCC--GCuGGCCa -3'
miRNA:   3'- aCGCAUCGUCU------UUGUGGcuCGcCCGG- -5'
14613 3' -55.7 NC_003521.1 + 64746 0.66 0.96301
Target:  5'- cGcCGUGGCcaAGACGCCGgccGGCGcGGCa -3'
miRNA:   3'- aC-GCAUCGucUUUGUGGC---UCGC-CCGg -5'
14613 3' -55.7 NC_003521.1 + 139756 0.66 0.96301
Target:  5'- cGCGUgccgacGGCAGGAuccgGCCGucGGCGGccGCCa -3'
miRNA:   3'- aCGCA------UCGUCUUug--UGGC--UCGCC--CGG- -5'
14613 3' -55.7 NC_003521.1 + 59001 0.66 0.960991
Target:  5'- gGCGUGGUAGAggUagcgaACCGAuauaguauuuaccucGCGcuuGGCCu -3'
miRNA:   3'- aCGCAUCGUCUuuG-----UGGCU---------------CGC---CCGG- -5'
14613 3' -55.7 NC_003521.1 + 130780 0.66 0.959603
Target:  5'- cUGCuGUcGGCGGGGuCACCGcAGCGcGCCc -3'
miRNA:   3'- -ACG-CA-UCGUCUUuGUGGC-UCGCcCGG- -5'
14613 3' -55.7 NC_003521.1 + 108185 0.66 0.959603
Target:  5'- ----aAGCAGAAcCGCCG-GUGGcGCCg -3'
miRNA:   3'- acgcaUCGUCUUuGUGGCuCGCC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.