Results 61 - 80 of 341 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14613 | 3' | -55.7 | NC_003521.1 | + | 130780 | 0.66 | 0.959603 |
Target: 5'- cUGCuGUcGGCGGGGuCACCGcAGCGcGCCc -3' miRNA: 3'- -ACG-CA-UCGUCUUuGUGGC-UCGCcCGG- -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 161185 | 0.66 | 0.959603 |
Target: 5'- cUGCaGcAGCAGAcGACGCCGAG-GcGCCg -3' miRNA: 3'- -ACG-CaUCGUCU-UUGUGGCUCgCcCGG- -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 101723 | 0.66 | 0.959603 |
Target: 5'- aUGCGcGGCGGggGCgagauggggaagGCCG-GCaGGUCg -3' miRNA: 3'- -ACGCaUCGUCuuUG------------UGGCuCGcCCGG- -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 220086 | 0.66 | 0.959603 |
Target: 5'- cGCGUAcacGCAGcugauGCACCGccAGCGGuaCg -3' miRNA: 3'- aCGCAU---CGUCuu---UGUGGC--UCGCCcgG- -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 53326 | 0.66 | 0.959603 |
Target: 5'- cGCaGUAGguGAAGUACC-AGUugaaGGGCCa -3' miRNA: 3'- aCG-CAUCguCUUUGUGGcUCG----CCCGG- -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 139360 | 0.66 | 0.959603 |
Target: 5'- gUGuUGUAGCAGcuggcgaaGAGCGCCGuGCucuuGGCCc -3' miRNA: 3'- -AC-GCAUCGUC--------UUUGUGGCuCGc---CCGG- -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 112203 | 0.66 | 0.958182 |
Target: 5'- cGCGUguccgaAGCGGAGGCGCUGcucaaucagcaguGCGaGGUCg -3' miRNA: 3'- aCGCA------UCGUCUUUGUGGCu------------CGC-CCGG- -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 45705 | 0.66 | 0.955986 |
Target: 5'- gUGCGUguguuuauuGGCGGGGcguCugCGGgacGCGGGUCa -3' miRNA: 3'- -ACGCA---------UCGUCUUu--GugGCU---CGCCCGG- -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 229454 | 0.66 | 0.955986 |
Target: 5'- -uUGUAGUAGAcACAUggcgUGGGCGGGUUa -3' miRNA: 3'- acGCAUCGUCUuUGUG----GCUCGCCCGG- -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 85562 | 0.66 | 0.955986 |
Target: 5'- gGCGUAcgagggguuGCGGAuggaACUGGG-GGGCCg -3' miRNA: 3'- aCGCAU---------CGUCUuug-UGGCUCgCCCGG- -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 88783 | 0.66 | 0.955986 |
Target: 5'- cUGCG--GguGAAGCACCGcuGC-GGCCu -3' miRNA: 3'- -ACGCauCguCUUUGUGGCu-CGcCCGG- -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 111253 | 0.66 | 0.955986 |
Target: 5'- gGCGcGGCGGAGcagcCAUCGu-CGGGCCc -3' miRNA: 3'- aCGCaUCGUCUUu---GUGGCucGCCCGG- -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 135226 | 0.66 | 0.955986 |
Target: 5'- aGCGccugAGCGGcuGCGCCG-GCGGcGgCg -3' miRNA: 3'- aCGCa---UCGUCuuUGUGGCuCGCC-CgG- -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 16100 | 0.66 | 0.955986 |
Target: 5'- cUGCGUcGGCG--AGCACCacGGGCGGGaCg -3' miRNA: 3'- -ACGCA-UCGUcuUUGUGG--CUCGCCCgG- -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 153617 | 0.66 | 0.955986 |
Target: 5'- gGCGcucAGCAGcuccuGCGCC-AGCGGGUg -3' miRNA: 3'- aCGCa--UCGUCuu---UGUGGcUCGCCCGg -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 33243 | 0.66 | 0.955986 |
Target: 5'- gGCGUugAGCuGgcACACgCGcAGCaGGCCg -3' miRNA: 3'- aCGCA--UCGuCuuUGUG-GC-UCGcCCGG- -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 138455 | 0.66 | 0.955986 |
Target: 5'- cGCGU-GCAu---CGCCG-GCGGcGCCa -3' miRNA: 3'- aCGCAuCGUcuuuGUGGCuCGCC-CGG- -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 144048 | 0.66 | 0.955986 |
Target: 5'- cUGCGgcGCuucuGcAugGCCGAGCuGGCg -3' miRNA: 3'- -ACGCauCGu---CuUugUGGCUCGcCCGg -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 165701 | 0.66 | 0.955986 |
Target: 5'- cGCcgaaAGCcGuc-CACCGuGCGGGCCa -3' miRNA: 3'- aCGca--UCGuCuuuGUGGCuCGCCCGG- -5' |
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14613 | 3' | -55.7 | NC_003521.1 | + | 32719 | 0.66 | 0.955986 |
Target: 5'- aGgGUGGgGGGuuggcGACGCCaccAGCGGGCg -3' miRNA: 3'- aCgCAUCgUCU-----UUGUGGc--UCGCCCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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