miRNA display CGI


Results 41 - 60 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14613 3' -55.7 NC_003521.1 + 37385 0.69 0.874426
Target:  5'- gGUGUucgaggcGGCGGggGCGCC---CGGGCCu -3'
miRNA:   3'- aCGCA-------UCGUCuuUGUGGcucGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 38162 0.67 0.948107
Target:  5'- gGUGUAGguGcaGGGCGuCCcAGCGgGGCCg -3'
miRNA:   3'- aCGCAUCguC--UUUGU-GGcUCGC-CCGG- -5'
14613 3' -55.7 NC_003521.1 + 38207 0.74 0.622638
Target:  5'- -aUGUAGCGGAcgauGGCGCCGAuGUagGGGCCg -3'
miRNA:   3'- acGCAUCGUCU----UUGUGGCU-CG--CCCGG- -5'
14613 3' -55.7 NC_003521.1 + 38245 0.68 0.895293
Target:  5'- gGCGgGGCGGAGACGCgGcccaGGGUCa -3'
miRNA:   3'- aCGCaUCGUCUUUGUGgCucg-CCCGG- -5'
14613 3' -55.7 NC_003521.1 + 39002 0.67 0.948107
Target:  5'- --gGUAGguGucGAgGCCgGAGCGGGCg -3'
miRNA:   3'- acgCAUCguCu-UUgUGG-CUCGCCCGg -5'
14613 3' -55.7 NC_003521.1 + 39033 0.66 0.966211
Target:  5'- aGCGacGGCGGGuguGGCGCCGAGgCGaacGGCUc -3'
miRNA:   3'- aCGCa-UCGUCU---UUGUGGCUC-GC---CCGG- -5'
14613 3' -55.7 NC_003521.1 + 39802 0.7 0.845393
Target:  5'- gGCucGGC-GggGCGCCGGGCGGuCCu -3'
miRNA:   3'- aCGcaUCGuCuuUGUGGCUCGCCcGG- -5'
14613 3' -55.7 NC_003521.1 + 40419 0.77 0.486753
Target:  5'- gGCGU-GCAGGGAgGCCGAaGCGGcgGCCg -3'
miRNA:   3'- aCGCAuCGUCUUUgUGGCU-CGCC--CGG- -5'
14613 3' -55.7 NC_003521.1 + 40915 0.69 0.882063
Target:  5'- aGCGaGGCGGggGCGgcCCGGGgGaGcGCCa -3'
miRNA:   3'- aCGCaUCGUCuuUGU--GGCUCgC-C-CGG- -5'
14613 3' -55.7 NC_003521.1 + 42734 0.68 0.919122
Target:  5'- aGCGUA-CAaGGGCACCGuGCGcGCCg -3'
miRNA:   3'- aCGCAUcGUcUUUGUGGCuCGCcCGG- -5'
14613 3' -55.7 NC_003521.1 + 43426 0.66 0.964315
Target:  5'- cUGCGUgcccgacgaggaggcGGCGGcgGCcCUGgaacucucacAGCGGGCCa -3'
miRNA:   3'- -ACGCA---------------UCGUCuuUGuGGC----------UCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 44313 0.66 0.964315
Target:  5'- uUGCuGUGGCcgcugcgggacgAGAGACA-CGAGCcugaggaggcggaacGGGCCg -3'
miRNA:   3'- -ACG-CAUCG------------UCUUUGUgGCUCG---------------CCCGG- -5'
14613 3' -55.7 NC_003521.1 + 45303 0.69 0.882063
Target:  5'- gGCcaggAGCcGGAGC-CCGAGCuGGCCg -3'
miRNA:   3'- aCGca--UCGuCUUUGuGGCUCGcCCGG- -5'
14613 3' -55.7 NC_003521.1 + 45705 0.66 0.955986
Target:  5'- gUGCGUguguuuauuGGCGGGGcguCugCGGgacGCGGGUCa -3'
miRNA:   3'- -ACGCA---------UCGUCUUu--GugGCU---CGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 46378 0.67 0.938884
Target:  5'- cGCGgcuGUgAGggGCGCgGGgugcguggggcgcGCGGGCCa -3'
miRNA:   3'- aCGCau-CG-UCuuUGUGgCU-------------CGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 47402 0.73 0.692106
Target:  5'- cUGCGcgAGCGGAgcuggauguAGCAUCGcuCGGGCCa -3'
miRNA:   3'- -ACGCa-UCGUCU---------UUGUGGCucGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 47555 0.78 0.398747
Target:  5'- aUGuCG-AGCGGGgaaGACGgCGAGCGGGCCa -3'
miRNA:   3'- -AC-GCaUCGUCU---UUGUgGCUCGCCCGG- -5'
14613 3' -55.7 NC_003521.1 + 49767 0.67 0.939346
Target:  5'- cGCc--GCGGGAACagaACUGAGCGucGGCCa -3'
miRNA:   3'- aCGcauCGUCUUUG---UGGCUCGC--CCGG- -5'
14613 3' -55.7 NC_003521.1 + 52131 0.7 0.821144
Target:  5'- cGcCGUGGUGGGAggguGCAUCGuAGCGGGUa -3'
miRNA:   3'- aC-GCAUCGUCUU----UGUGGC-UCGCCCGg -5'
14613 3' -55.7 NC_003521.1 + 52670 0.74 0.632601
Target:  5'- aGCGgcAGCAGcgGCACCGgcagcgucGGCGGuGCCa -3'
miRNA:   3'- aCGCa-UCGUCuuUGUGGC--------UCGCC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.