miRNA display CGI


Results 61 - 80 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14614 3' -55.7 NC_003521.1 + 19062 0.67 0.938576
Target:  5'- ---cGGCgGCGCGGc-GCAGaCGCUGa -3'
miRNA:   3'- ugaaCCGgUGCGCUuuCGUC-GCGACc -5'
14614 3' -55.7 NC_003521.1 + 113344 0.67 0.938576
Target:  5'- gAC-UGGUgACGCGcaucuCGGCGCUGGc -3'
miRNA:   3'- -UGaACCGgUGCGCuuuc-GUCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 127668 0.67 0.938576
Target:  5'- uCUUGGCCGCGaGcAGGCGGCGg--- -3'
miRNA:   3'- uGAACCGGUGCgCuUUCGUCGCgacc -5'
14614 3' -55.7 NC_003521.1 + 95671 0.67 0.938576
Target:  5'- gAC-UGGCCGCGCGAcuccuucucCAGCaGCUGa -3'
miRNA:   3'- -UGaACCGGUGCGCUuuc------GUCG-CGACc -5'
14614 3' -55.7 NC_003521.1 + 46485 0.67 0.938576
Target:  5'- aACaUGGCCAUGggguCGggGGUcuucuuggGGUGCUGGc -3'
miRNA:   3'- -UGaACCGGUGC----GCuuUCG--------UCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 110341 0.67 0.938576
Target:  5'- ---cGGCCGCGCuc--GCGGUguaGCUGGg -3'
miRNA:   3'- ugaaCCGGUGCGcuuuCGUCG---CGACC- -5'
14614 3' -55.7 NC_003521.1 + 207422 0.67 0.938576
Target:  5'- cGCaUGGUCGguagccaGgGAGAGCGGCgGCUGGc -3'
miRNA:   3'- -UGaACCGGUg------CgCUUUCGUCG-CGACC- -5'
14614 3' -55.7 NC_003521.1 + 150561 0.67 0.938576
Target:  5'- uGCgggUGGUgGCgGCGgcGGCGGCGC-GGc -3'
miRNA:   3'- -UGa--ACCGgUG-CGCuuUCGUCGCGaCC- -5'
14614 3' -55.7 NC_003521.1 + 103068 0.67 0.938576
Target:  5'- gGCggGuGCgCGgGCGAGGGCuGCuGCUGGg -3'
miRNA:   3'- -UGaaC-CG-GUgCGCUUUCGuCG-CGACC- -5'
14614 3' -55.7 NC_003521.1 + 30908 0.67 0.938576
Target:  5'- aACUgcGG-CAgGCGAGAGCGGUcCUGGg -3'
miRNA:   3'- -UGAa-CCgGUgCGCUUUCGUCGcGACC- -5'
14614 3' -55.7 NC_003521.1 + 113586 0.67 0.938109
Target:  5'- gGCUgGGCCuCGggggcaaCGggGGCGGCGCUc- -3'
miRNA:   3'- -UGAaCCGGuGC-------GCuuUCGUCGCGAcc -5'
14614 3' -55.7 NC_003521.1 + 32221 0.67 0.935736
Target:  5'- gGCUaUGGCCGcCGCaaacucagucgccguGAGA-UAGCGCUGGa -3'
miRNA:   3'- -UGA-ACCGGU-GCG---------------CUUUcGUCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 106575 0.67 0.933797
Target:  5'- cACcgGGUCACccuggcCGAGGGCGGCGCgGGc -3'
miRNA:   3'- -UGaaCCGGUGc-----GCUUUCGUCGCGaCC- -5'
14614 3' -55.7 NC_003521.1 + 187645 0.67 0.933797
Target:  5'- cGC-UGGCCAUcuucaucgGCGAGGGCGGcCGCg-- -3'
miRNA:   3'- -UGaACCGGUG--------CGCUUUCGUC-GCGacc -5'
14614 3' -55.7 NC_003521.1 + 198962 0.67 0.933797
Target:  5'- ---gGGCaccagGCGCGAGAGC-GUGCUGa -3'
miRNA:   3'- ugaaCCGg----UGCGCUUUCGuCGCGACc -5'
14614 3' -55.7 NC_003521.1 + 7665 0.67 0.933797
Target:  5'- ---cGGCgGCGCGGAcAGCGGUGCc-- -3'
miRNA:   3'- ugaaCCGgUGCGCUU-UCGUCGCGacc -5'
14614 3' -55.7 NC_003521.1 + 104087 0.67 0.933797
Target:  5'- gGCgcGGCaggACGCgGAAGGCGGCGCg-- -3'
miRNA:   3'- -UGaaCCGg--UGCG-CUUUCGUCGCGacc -5'
14614 3' -55.7 NC_003521.1 + 129913 0.67 0.933797
Target:  5'- ---cGGCCGCGCGccuGCuGCGCg-- -3'
miRNA:   3'- ugaaCCGGUGCGCuuuCGuCGCGacc -5'
14614 3' -55.7 NC_003521.1 + 75018 0.67 0.933797
Target:  5'- ---gGGCCAggaccccuacUGCGAcGGCAGCGCcagcGGg -3'
miRNA:   3'- ugaaCCGGU----------GCGCUuUCGUCGCGa---CC- -5'
14614 3' -55.7 NC_003521.1 + 131088 0.67 0.933307
Target:  5'- ---cGGCuCGCGCGGgcuccggacggcgGGGCGGCGC-GGc -3'
miRNA:   3'- ugaaCCG-GUGCGCU-------------UUCGUCGCGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.