miRNA display CGI


Results 41 - 60 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14614 3' -55.7 NC_003521.1 + 111508 0.66 0.951556
Target:  5'- ---cGGgCugGCGgcGGCGGCGCa-- -3'
miRNA:   3'- ugaaCCgGugCGCuuUCGUCGCGacc -5'
14614 3' -55.7 NC_003521.1 + 234061 0.66 0.951556
Target:  5'- uACUccUGGCCauggACGCccugGGAcucGGCgAGCGCUGGc -3'
miRNA:   3'- -UGA--ACCGG----UGCG----CUU---UCG-UCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 198280 0.66 0.951556
Target:  5'- aGCcgGGCguCGCGGAGGac-CGCUGGg -3'
miRNA:   3'- -UGaaCCGguGCGCUUUCgucGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 196994 0.66 0.951556
Target:  5'- ---gGGCC-CGCGGccGGCGGCgGCUGa -3'
miRNA:   3'- ugaaCCGGuGCGCUu-UCGUCG-CGACc -5'
14614 3' -55.7 NC_003521.1 + 92014 0.66 0.951556
Target:  5'- gGCgaGGCgCG-GCGgcGGCGGCGgUGGg -3'
miRNA:   3'- -UGaaCCG-GUgCGCuuUCGUCGCgACC- -5'
14614 3' -55.7 NC_003521.1 + 153109 0.66 0.951156
Target:  5'- cGCcgGGCgCGCGCGAcggcagcAGGCGGCuuUGGu -3'
miRNA:   3'- -UGaaCCG-GUGCGCU-------UUCGUCGcgACC- -5'
14614 3' -55.7 NC_003521.1 + 28755 0.66 0.947453
Target:  5'- cGCgcgGGCCGCGCcAccGCccuAGCGCUGc -3'
miRNA:   3'- -UGaa-CCGGUGCGcUuuCG---UCGCGACc -5'
14614 3' -55.7 NC_003521.1 + 30841 0.66 0.947453
Target:  5'- cACggGcGCCuuGCGAcGGCAGCgGUUGGc -3'
miRNA:   3'- -UGaaC-CGGugCGCUuUCGUCG-CGACC- -5'
14614 3' -55.7 NC_003521.1 + 151581 0.66 0.947453
Target:  5'- ---cGG-CGCGCGuuAGCGgucuccGCGCUGGa -3'
miRNA:   3'- ugaaCCgGUGCGCuuUCGU------CGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 57154 0.67 0.944885
Target:  5'- ---cGGCCACGCGcggcaggucgucGgcgugccgcagcacgAAGCGGCGCaGGg -3'
miRNA:   3'- ugaaCCGGUGCGC------------U---------------UUCGUCGCGaCC- -5'
14614 3' -55.7 NC_003521.1 + 137536 0.67 0.943128
Target:  5'- cGCguggUGGCCuACGaCGAGA-CGGCGCcGGc -3'
miRNA:   3'- -UGa---ACCGG-UGC-GCUUUcGUCGCGaCC- -5'
14614 3' -55.7 NC_003521.1 + 190981 0.67 0.943128
Target:  5'- gACgaGGCCGaGCGgcAGCAGgCGCaGGu -3'
miRNA:   3'- -UGaaCCGGUgCGCuuUCGUC-GCGaCC- -5'
14614 3' -55.7 NC_003521.1 + 223234 0.67 0.943128
Target:  5'- ---aGaGCCccugcaGCaGCGAGAGCGuGCGCUGGu -3'
miRNA:   3'- ugaaC-CGG------UG-CGCUUUCGU-CGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 107429 0.67 0.943128
Target:  5'- ---aGaGCCgACGCGAAAGCGcggaccgccGCGCUGu -3'
miRNA:   3'- ugaaC-CGG-UGCGCUUUCGU---------CGCGACc -5'
14614 3' -55.7 NC_003521.1 + 206660 0.67 0.943128
Target:  5'- -gUUGGCC-CGCGAccucaAGGCcuucguGCGCgUGGg -3'
miRNA:   3'- ugAACCGGuGCGCU-----UUCGu-----CGCG-ACC- -5'
14614 3' -55.7 NC_003521.1 + 67837 0.67 0.943128
Target:  5'- ---cGGCaggaACGCGAGaagaacgacacGGCAGCgGUUGGg -3'
miRNA:   3'- ugaaCCGg---UGCGCUU-----------UCGUCG-CGACC- -5'
14614 3' -55.7 NC_003521.1 + 144112 0.67 0.942683
Target:  5'- gGCUgcUGGaCCGcCGCGGccuggacGAGguGCGcCUGGg -3'
miRNA:   3'- -UGA--ACC-GGU-GCGCU-------UUCguCGC-GACC- -5'
14614 3' -55.7 NC_003521.1 + 124248 0.67 0.941786
Target:  5'- ---gGGCCGCGCGAGaccAGCucggacuuuucggaGGCGC-GGc -3'
miRNA:   3'- ugaaCCGGUGCGCUU---UCG--------------UCGCGaCC- -5'
14614 3' -55.7 NC_003521.1 + 177184 0.67 0.940424
Target:  5'- cACggGGUUGCGCGugcgguacuucuccAGGCGGCGCUGc -3'
miRNA:   3'- -UGaaCCGGUGCGCu-------------UUCGUCGCGACc -5'
14614 3' -55.7 NC_003521.1 + 163710 0.67 0.940424
Target:  5'- ---cGGCCACGaggcCGAauccugcgucgggauGAGCGGCGCcGGc -3'
miRNA:   3'- ugaaCCGGUGC----GCU---------------UUCGUCGCGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.