Results 21 - 40 of 196 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 76970 | 0.66 | 0.962557 |
Target: 5'- ---cGGCCgaugcGCGUGAugcuGGCGGCGaUGGg -3' miRNA: 3'- ugaaCCGG-----UGCGCUu---UCGUCGCgACC- -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 59357 | 0.66 | 0.962557 |
Target: 5'- cGCUgcaGGCgGCGCGc---CAGCcGCUGGa -3' miRNA: 3'- -UGAa--CCGgUGCGCuuucGUCG-CGACC- -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 212285 | 0.66 | 0.960511 |
Target: 5'- gGC-UGGCCAgGgCGAAGGCcggcaugggcacgcaGGCGUUGa -3' miRNA: 3'- -UGaACCGGUgC-GCUUUCG---------------UCGCGACc -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 34480 | 0.66 | 0.959104 |
Target: 5'- ---aGGCCAgcagcuCGCGGAAGCAgagcagcgaGCGCaGGu -3' miRNA: 3'- ugaaCCGGU------GCGCUUUCGU---------CGCGaCC- -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 110285 | 0.66 | 0.959104 |
Target: 5'- uGCUUcugGGUCugGCGc-AGCAcgaaguugucGCGCUGGu -3' miRNA: 3'- -UGAA---CCGGugCGCuuUCGU----------CGCGACC- -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 111145 | 0.66 | 0.959104 |
Target: 5'- cGCUggGGCCACGgGAcGGUccgcauAGCGC-GGc -3' miRNA: 3'- -UGAa-CCGGUGCgCUuUCG------UCGCGaCC- -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 218424 | 0.66 | 0.959104 |
Target: 5'- aGCaUGGCCA-GCGAcAGCGGCGg--- -3' miRNA: 3'- -UGaACCGGUgCGCUuUCGUCGCgacc -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 163702 | 0.66 | 0.959104 |
Target: 5'- cGCaaGGCCguGCGCGAGuGCAuGCGCg-- -3' miRNA: 3'- -UGaaCCGG--UGCGCUUuCGU-CGCGacc -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 216266 | 0.66 | 0.958747 |
Target: 5'- ---aGGCCGC-CGAGuAGUAGCGCcagcucgUGGa -3' miRNA: 3'- ugaaCCGGUGcGCUU-UCGUCGCG-------ACC- -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 122504 | 0.66 | 0.957664 |
Target: 5'- uGCagGGCCaACGCGGcggcgggcaggccGGCGGCGgUGGu -3' miRNA: 3'- -UGaaCCGG-UGCGCUu------------UCGUCGCgACC- -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 105936 | 0.66 | 0.956931 |
Target: 5'- uGCgugUGGCCgGCGCGGAugaugaccgugugucGGguGCGCa-- -3' miRNA: 3'- -UGa--ACCGG-UGCGCUU---------------UCguCGCGacc -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 168808 | 0.66 | 0.955439 |
Target: 5'- ---aGGCCACGCGGc-GCAuccugaaGCUGGg -3' miRNA: 3'- ugaaCCGGUGCGCUuuCGUcg-----CGACC- -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 121382 | 0.66 | 0.955439 |
Target: 5'- gGCUcuugggGGCCAUGaUGGugAAGCcguuGCGCUGGu -3' miRNA: 3'- -UGAa-----CCGGUGC-GCU--UUCGu---CGCGACC- -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 30086 | 0.66 | 0.955439 |
Target: 5'- ---cGGCCGCucaCGguAGCAGCGCcgaGGg -3' miRNA: 3'- ugaaCCGGUGc--GCuuUCGUCGCGa--CC- -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 74568 | 0.66 | 0.955439 |
Target: 5'- uCUgagGGCgGCGaCGGAgcGGCGGCGC-GGc -3' miRNA: 3'- uGAa--CCGgUGC-GCUU--UCGUCGCGaCC- -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 75797 | 0.66 | 0.95506 |
Target: 5'- ---aGGCCGCgauggaagccgcgGCGAucGCGGCcuccucGCUGGg -3' miRNA: 3'- ugaaCCGGUG-------------CGCUuuCGUCG------CGACC- -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 88262 | 0.66 | 0.95506 |
Target: 5'- cACggUGGagCGCGUGAcgcugccguaccuGAGCAGCguGCUGGg -3' miRNA: 3'- -UGa-ACCg-GUGCGCU-------------UUCGUCG--CGACC- -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 144921 | 0.66 | 0.954297 |
Target: 5'- --gUGGCCgaggaguucaugucGCGCGuc-GCcGCGCUGGc -3' miRNA: 3'- ugaACCGG--------------UGCGCuuuCGuCGCGACC- -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 68104 | 0.66 | 0.953135 |
Target: 5'- cGC-UGGUCuccaagACGUGGacggagacgccguacGAGCAGUGCUGGu -3' miRNA: 3'- -UGaACCGG------UGCGCU---------------UUCGUCGCGACC- -5' |
|||||||
14614 | 3' | -55.7 | NC_003521.1 | + | 234061 | 0.66 | 0.951556 |
Target: 5'- uACUccUGGCCauggACGCccugGGAcucGGCgAGCGCUGGc -3' miRNA: 3'- -UGA--ACCGG----UGCG----CUU---UCG-UCGCGACC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home