miRNA display CGI


Results 21 - 40 of 196 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14614 3' -55.7 NC_003521.1 + 111508 0.66 0.951556
Target:  5'- ---cGGgCugGCGgcGGCGGCGCa-- -3'
miRNA:   3'- ugaaCCgGugCGCuuUCGUCGCGacc -5'
14614 3' -55.7 NC_003521.1 + 198280 0.66 0.951556
Target:  5'- aGCcgGGCguCGCGGAGGac-CGCUGGg -3'
miRNA:   3'- -UGaaCCGguGCGCUUUCgucGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 196994 0.66 0.951556
Target:  5'- ---gGGCC-CGCGGccGGCGGCgGCUGa -3'
miRNA:   3'- ugaaCCGGuGCGCUu-UCGUCG-CGACc -5'
14614 3' -55.7 NC_003521.1 + 27235 0.66 0.965802
Target:  5'- uGC-UGGUCGgGCGAGAGCAcGgGCUc- -3'
miRNA:   3'- -UGaACCGGUgCGCUUUCGU-CgCGAcc -5'
14614 3' -55.7 NC_003521.1 + 107661 0.66 0.965802
Target:  5'- uACUUGGggACGCGGAacauauuacGGCucauGGCGUUGGc -3'
miRNA:   3'- -UGAACCggUGCGCUU---------UCG----UCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 122504 0.66 0.957664
Target:  5'- uGCagGGCCaACGCGGcggcgggcaggccGGCGGCGgUGGu -3'
miRNA:   3'- -UGaaCCGG-UGCGCUu------------UCGUCGCgACC- -5'
14614 3' -55.7 NC_003521.1 + 137298 0.66 0.962557
Target:  5'- aGCUgcgGGUgGCGCGGcuGCuGCGC-GGc -3'
miRNA:   3'- -UGAa--CCGgUGCGCUuuCGuCGCGaCC- -5'
14614 3' -55.7 NC_003521.1 + 110285 0.66 0.959104
Target:  5'- uGCUUcugGGUCugGCGc-AGCAcgaaguugucGCGCUGGu -3'
miRNA:   3'- -UGAA---CCGGugCGCuuUCGU----------CGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 59357 0.66 0.962557
Target:  5'- cGCUgcaGGCgGCGCGc---CAGCcGCUGGa -3'
miRNA:   3'- -UGAa--CCGgUGCGCuuucGUCG-CGACC- -5'
14614 3' -55.7 NC_003521.1 + 196763 0.66 0.962557
Target:  5'- uGCUgccccGGCCgGCGCGAccGCgGGCGC-GGu -3'
miRNA:   3'- -UGAa----CCGG-UGCGCUuuCG-UCGCGaCC- -5'
14614 3' -55.7 NC_003521.1 + 129240 0.66 0.965802
Target:  5'- cGC-UGGCCACGCGc-GGCA-C-CUGGa -3'
miRNA:   3'- -UGaACCGGUGCGCuuUCGUcGcGACC- -5'
14614 3' -55.7 NC_003521.1 + 168808 0.66 0.955439
Target:  5'- ---aGGCCACGCGGc-GCAuccugaaGCUGGg -3'
miRNA:   3'- ugaaCCGGUGCGCUuuCGUcg-----CGACC- -5'
14614 3' -55.7 NC_003521.1 + 75797 0.66 0.95506
Target:  5'- ---aGGCCGCgauggaagccgcgGCGAucGCGGCcuccucGCUGGg -3'
miRNA:   3'- ugaaCCGGUG-------------CGCUuuCGUCG------CGACC- -5'
14614 3' -55.7 NC_003521.1 + 151581 0.66 0.947453
Target:  5'- ---cGG-CGCGCGuuAGCGgucuccGCGCUGGa -3'
miRNA:   3'- ugaaCCgGUGCGCuuUCGU------CGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 152728 0.66 0.962557
Target:  5'- aGCUguUGGCCACcagcCGGuuguccuccacGGGCAGCGCgcGGa -3'
miRNA:   3'- -UGA--ACCGGUGc---GCU-----------UUCGUCGCGa-CC- -5'
14614 3' -55.7 NC_003521.1 + 195183 0.66 0.951556
Target:  5'- ---cGGaCCcCGCGGAgccGGCGGCGgUGGc -3'
miRNA:   3'- ugaaCC-GGuGCGCUU---UCGUCGCgACC- -5'
14614 3' -55.7 NC_003521.1 + 63877 0.66 0.965802
Target:  5'- gACgaGGCgGCGCGccgggagcuGCAGCaGUUGGg -3'
miRNA:   3'- -UGaaCCGgUGCGCuuu------CGUCG-CGACC- -5'
14614 3' -55.7 NC_003521.1 + 88262 0.66 0.95506
Target:  5'- cACggUGGagCGCGUGAcgcugccguaccuGAGCAGCguGCUGGg -3'
miRNA:   3'- -UGa-ACCg-GUGCGCU-------------UUCGUCG--CGACC- -5'
14614 3' -55.7 NC_003521.1 + 15049 0.66 0.962557
Target:  5'- gACga-GCgGCGCGAgcgcGAGCGGCGCg-- -3'
miRNA:   3'- -UGaacCGgUGCGCU----UUCGUCGCGacc -5'
14614 3' -55.7 NC_003521.1 + 204891 0.66 0.965802
Target:  5'- -aUUGGCCGCGCGgcGGgA-CGgUGGc -3'
miRNA:   3'- ugAACCGGUGCGCuuUCgUcGCgACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.