miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14614 3' -55.7 NC_003521.1 + 76970 0.66 0.962557
Target:  5'- ---cGGCCgaugcGCGUGAugcuGGCGGCGaUGGg -3'
miRNA:   3'- ugaaCCGG-----UGCGCUu---UCGUCGCgACC- -5'
14614 3' -55.7 NC_003521.1 + 31897 0.66 0.962557
Target:  5'- ---aGGCCGCggcacaggaacuGCGGcAGGCAGCGCg-- -3'
miRNA:   3'- ugaaCCGGUG------------CGCU-UUCGUCGCGacc -5'
14614 3' -55.7 NC_003521.1 + 204891 0.66 0.965802
Target:  5'- -aUUGGCCGCGCGgcGGgA-CGgUGGc -3'
miRNA:   3'- ugAACCGGUGCGCuuUCgUcGCgACC- -5'
14614 3' -55.7 NC_003521.1 + 110285 0.66 0.959104
Target:  5'- uGCUUcugGGUCugGCGc-AGCAcgaaguugucGCGCUGGu -3'
miRNA:   3'- -UGAA---CCGGugCGCuuUCGU----------CGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 144921 0.66 0.954297
Target:  5'- --gUGGCCgaggaguucaugucGCGCGuc-GCcGCGCUGGc -3'
miRNA:   3'- ugaACCGG--------------UGCGCuuuCGuCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 121382 0.66 0.955439
Target:  5'- gGCUcuugggGGCCAUGaUGGugAAGCcguuGCGCUGGu -3'
miRNA:   3'- -UGAa-----CCGGUGC-GCU--UUCGu---CGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 216266 0.66 0.958747
Target:  5'- ---aGGCCGC-CGAGuAGUAGCGCcagcucgUGGa -3'
miRNA:   3'- ugaaCCGGUGcGCUU-UCGUCGCG-------ACC- -5'
14614 3' -55.7 NC_003521.1 + 92014 0.66 0.951556
Target:  5'- gGCgaGGCgCG-GCGgcGGCGGCGgUGGg -3'
miRNA:   3'- -UGaaCCG-GUgCGCuuUCGUCGCgACC- -5'
14614 3' -55.7 NC_003521.1 + 68104 0.66 0.953135
Target:  5'- cGC-UGGUCuccaagACGUGGacggagacgccguacGAGCAGUGCUGGu -3'
miRNA:   3'- -UGaACCGG------UGCGCU---------------UUCGUCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 234061 0.66 0.951556
Target:  5'- uACUccUGGCCauggACGCccugGGAcucGGCgAGCGCUGGc -3'
miRNA:   3'- -UGA--ACCGG----UGCG----CUU---UCG-UCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 218424 0.66 0.959104
Target:  5'- aGCaUGGCCA-GCGAcAGCGGCGg--- -3'
miRNA:   3'- -UGaACCGGUgCGCUuUCGUCGCgacc -5'
14614 3' -55.7 NC_003521.1 + 105936 0.66 0.956931
Target:  5'- uGCgugUGGCCgGCGCGGAugaugaccgugugucGGguGCGCa-- -3'
miRNA:   3'- -UGa--ACCGG-UGCGCUU---------------UCguCGCGacc -5'
14614 3' -55.7 NC_003521.1 + 28755 0.66 0.947453
Target:  5'- cGCgcgGGCCGCGCcAccGCccuAGCGCUGc -3'
miRNA:   3'- -UGaa-CCGGUGCGcUuuCG---UCGCGACc -5'
14614 3' -55.7 NC_003521.1 + 30086 0.66 0.955439
Target:  5'- ---cGGCCGCucaCGguAGCAGCGCcgaGGg -3'
miRNA:   3'- ugaaCCGGUGc--GCuuUCGUCGCGa--CC- -5'
14614 3' -55.7 NC_003521.1 + 34480 0.66 0.959104
Target:  5'- ---aGGCCAgcagcuCGCGGAAGCAgagcagcgaGCGCaGGu -3'
miRNA:   3'- ugaaCCGGU------GCGCUUUCGU---------CGCGaCC- -5'
14614 3' -55.7 NC_003521.1 + 74568 0.66 0.955439
Target:  5'- uCUgagGGCgGCGaCGGAgcGGCGGCGC-GGc -3'
miRNA:   3'- uGAa--CCGgUGC-GCUU--UCGUCGCGaCC- -5'
14614 3' -55.7 NC_003521.1 + 59357 0.66 0.962557
Target:  5'- cGCUgcaGGCgGCGCGc---CAGCcGCUGGa -3'
miRNA:   3'- -UGAa--CCGgUGCGCuuucGUCG-CGACC- -5'
14614 3' -55.7 NC_003521.1 + 111145 0.66 0.959104
Target:  5'- cGCUggGGCCACGgGAcGGUccgcauAGCGC-GGc -3'
miRNA:   3'- -UGAa-CCGGUGCgCUuUCG------UCGCGaCC- -5'
14614 3' -55.7 NC_003521.1 + 153109 0.66 0.951156
Target:  5'- cGCcgGGCgCGCGCGAcggcagcAGGCGGCuuUGGu -3'
miRNA:   3'- -UGaaCCG-GUGCGCU-------UUCGUCGcgACC- -5'
14614 3' -55.7 NC_003521.1 + 35995 0.66 0.962557
Target:  5'- gGCUUGGUCA-GCGAcGGCGaCGgaGGu -3'
miRNA:   3'- -UGAACCGGUgCGCUuUCGUcGCgaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.