miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14614 3' -55.7 NC_003521.1 + 145889 0.7 0.810498
Target:  5'- gACgaGGCCGCcggcgGCGGGAGCAGCgGC-GGu -3'
miRNA:   3'- -UGaaCCGGUG-----CGCUUUCGUCG-CGaCC- -5'
14614 3' -55.7 NC_003521.1 + 91327 0.72 0.708569
Target:  5'- cGCggGGgCACGCGcAGGCgaGGUGCUGGu -3'
miRNA:   3'- -UGaaCCgGUGCGCuUUCG--UCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 150964 0.72 0.708569
Target:  5'- ----aGUCGCGCGAc-GCGGCGCUGGc -3'
miRNA:   3'- ugaacCGGUGCGCUuuCGUCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 85751 0.72 0.718317
Target:  5'- aACUUGGCCAUgaGCGAGguGGCcAGCGCc-- -3'
miRNA:   3'- -UGAACCGGUG--CGCUU--UCG-UCGCGacc -5'
14614 3' -55.7 NC_003521.1 + 128063 0.72 0.737594
Target:  5'- gACgc-GCCGCGCGAugccgcccauGGGCucGCGCUGGa -3'
miRNA:   3'- -UGaacCGGUGCGCU----------UUCGu-CGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 149604 0.71 0.747104
Target:  5'- gGCUgcacGCCcucauGCGCGAAA-CGGCGCUGGa -3'
miRNA:   3'- -UGAac--CGG-----UGCGCUUUcGUCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 197145 0.71 0.765827
Target:  5'- gACgUGGCCcUGCuGGAAGUuccGCGCUGGg -3'
miRNA:   3'- -UGaACCGGuGCG-CUUUCGu--CGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 18094 0.71 0.79215
Target:  5'- ---cGGCCGCGgGGAcggaggaGGUAGCGgUGGa -3'
miRNA:   3'- ugaaCCGGUGCgCUU-------UCGUCGCgACC- -5'
14614 3' -55.7 NC_003521.1 + 215650 0.7 0.801841
Target:  5'- cGCaUGGUCGCgGCGGGAGCAGCGa--- -3'
miRNA:   3'- -UGaACCGGUG-CGCUUUCGUCGCgacc -5'
14614 3' -55.7 NC_003521.1 + 43473 0.72 0.708569
Target:  5'- ---gGGCCAgCGCGgcGGCcGUGCUGGc -3'
miRNA:   3'- ugaaCCGGU-GCGCuuUCGuCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 174504 0.72 0.698758
Target:  5'- gACUgcagGGCCGCGau--GGCcGCGCUGGu -3'
miRNA:   3'- -UGAa---CCGGUGCgcuuUCGuCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 19153 0.72 0.698758
Target:  5'- gGCgUGGUgAC-CGAGAGCacGGCGCUGGu -3'
miRNA:   3'- -UGaACCGgUGcGCUUUCG--UCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 168534 0.85 0.155515
Target:  5'- gGCUggcGGCCAgCGCGgcGGCGGCGCUGGc -3'
miRNA:   3'- -UGAa--CCGGU-GCGCuuUCGUCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 60685 0.78 0.386552
Target:  5'- uGCUgcGGCCGCGCGGgggacccggGGGCGGCGCgGGu -3'
miRNA:   3'- -UGAa-CCGGUGCGCU---------UUCGUCGCGaCC- -5'
14614 3' -55.7 NC_003521.1 + 110337 0.76 0.50812
Target:  5'- ---aGGCCACGCGugacaggucgccgaAGAGCaggAGCGCUGGc -3'
miRNA:   3'- ugaaCCGGUGCGC--------------UUUCG---UCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 54300 0.76 0.520532
Target:  5'- gGC-UGGCCACGU-AGAGCAGCGCg-- -3'
miRNA:   3'- -UGaACCGGUGCGcUUUCGUCGCGacc -5'
14614 3' -55.7 NC_003521.1 + 64211 0.75 0.539851
Target:  5'- uGC-UGGCCACGC---AGCAGCGCgaGGa -3'
miRNA:   3'- -UGaACCGGUGCGcuuUCGUCGCGa-CC- -5'
14614 3' -55.7 NC_003521.1 + 144060 0.75 0.549602
Target:  5'- uGCaUGGCCGaGCu--GGCGGCGCUGGg -3'
miRNA:   3'- -UGaACCGGUgCGcuuUCGUCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 101396 0.74 0.589088
Target:  5'- cGCUUgacGGCCACGCagGAGAGCccguGCgGCUGGa -3'
miRNA:   3'- -UGAA---CCGGUGCG--CUUUCGu---CG-CGACC- -5'
14614 3' -55.7 NC_003521.1 + 215197 0.73 0.639061
Target:  5'- --gUGGUCACGCGccAGCAGCGCc-- -3'
miRNA:   3'- ugaACCGGUGCGCuuUCGUCGCGacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.