miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14614 3' -55.7 NC_003521.1 + 7665 0.67 0.933797
Target:  5'- ---cGGCgGCGCGGAcAGCGGUGCc-- -3'
miRNA:   3'- ugaaCCGgUGCGCUU-UCGUCGCGacc -5'
14614 3' -55.7 NC_003521.1 + 7737 0.69 0.866346
Target:  5'- ---gGGCgGCGCGA--GCGGCGgaGGc -3'
miRNA:   3'- ugaaCCGgUGCGCUuuCGUCGCgaCC- -5'
14614 3' -55.7 NC_003521.1 + 13847 0.71 0.784096
Target:  5'- uAUUUGGCUcgGCGCGGgggucucugcGGGCGGCGCcgccaUGGa -3'
miRNA:   3'- -UGAACCGG--UGCGCU----------UUCGUCGCG-----ACC- -5'
14614 3' -55.7 NC_003521.1 + 13918 0.72 0.737594
Target:  5'- ---gGGCC--GCGGAGGCcGCGCUGGc -3'
miRNA:   3'- ugaaCCGGugCGCUUUCGuCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 15049 0.66 0.962557
Target:  5'- gACga-GCgGCGCGAgcgcGAGCGGCGCg-- -3'
miRNA:   3'- -UGaacCGgUGCGCU----UUCGUCGCGacc -5'
14614 3' -55.7 NC_003521.1 + 15516 0.68 0.887381
Target:  5'- cGCUcGGgUugGCGgcGGCAuguggcgaacGCGCUGGg -3'
miRNA:   3'- -UGAaCCgGugCGCuuUCGU----------CGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 17141 0.71 0.783194
Target:  5'- gACgagUGGUUccagcagcgGCGCGAGGccgaggcGCAGCGCUGGc -3'
miRNA:   3'- -UGa--ACCGG---------UGCGCUUU-------CGUCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 18094 0.71 0.79215
Target:  5'- ---cGGCCGCGgGGAcggaggaGGUAGCGgUGGa -3'
miRNA:   3'- ugaaCCGGUGCgCUU-------UCGUCGCgACC- -5'
14614 3' -55.7 NC_003521.1 + 18729 0.7 0.835507
Target:  5'- cGC-UGGCgGCgGCGAucguGGCGGCGgUGGc -3'
miRNA:   3'- -UGaACCGgUG-CGCUu---UCGUCGCgACC- -5'
14614 3' -55.7 NC_003521.1 + 19062 0.67 0.938576
Target:  5'- ---cGGCgGCGCGGc-GCAGaCGCUGa -3'
miRNA:   3'- ugaaCCGgUGCGCUuuCGUC-GCGACc -5'
14614 3' -55.7 NC_003521.1 + 19153 0.72 0.698758
Target:  5'- gGCgUGGUgAC-CGAGAGCacGGCGCUGGu -3'
miRNA:   3'- -UGaACCGgUGcGCUUUCG--UCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 27235 0.66 0.965802
Target:  5'- uGC-UGGUCGgGCGAGAGCAcGgGCUc- -3'
miRNA:   3'- -UGaACCGGUgCGCUUUCGU-CgCGAcc -5'
14614 3' -55.7 NC_003521.1 + 28755 0.66 0.947453
Target:  5'- cGCgcgGGCCGCGCcAccGCccuAGCGCUGc -3'
miRNA:   3'- -UGaa-CCGGUGCGcUuuCG---UCGCGACc -5'
14614 3' -55.7 NC_003521.1 + 30086 0.66 0.955439
Target:  5'- ---cGGCCGCucaCGguAGCAGCGCcgaGGg -3'
miRNA:   3'- ugaaCCGGUGc--GCuuUCGUCGCGa--CC- -5'
14614 3' -55.7 NC_003521.1 + 30841 0.66 0.947453
Target:  5'- cACggGcGCCuuGCGAcGGCAGCgGUUGGc -3'
miRNA:   3'- -UGaaC-CGGugCGCUuUCGUCG-CGACC- -5'
14614 3' -55.7 NC_003521.1 + 30908 0.67 0.938576
Target:  5'- aACUgcGG-CAgGCGAGAGCGGUcCUGGg -3'
miRNA:   3'- -UGAa-CCgGUgCGCUUUCGUCGcGACC- -5'
14614 3' -55.7 NC_003521.1 + 31832 0.68 0.887381
Target:  5'- ---cGGCCcggGCGcCGAAGGUGGCGUUGa -3'
miRNA:   3'- ugaaCCGG---UGC-GCUUUCGUCGCGACc -5'
14614 3' -55.7 NC_003521.1 + 31897 0.66 0.962557
Target:  5'- ---aGGCCGCggcacaggaacuGCGGcAGGCAGCGCg-- -3'
miRNA:   3'- ugaaCCGGUG------------CGCU-UUCGUCGCGacc -5'
14614 3' -55.7 NC_003521.1 + 32097 0.68 0.91809
Target:  5'- ---aGcGCCAUGCGuuuGGCGGCGC-GGc -3'
miRNA:   3'- ugaaC-CGGUGCGCuu-UCGUCGCGaCC- -5'
14614 3' -55.7 NC_003521.1 + 32221 0.67 0.935736
Target:  5'- gGCUaUGGCCGcCGCaaacucagucgccguGAGA-UAGCGCUGGa -3'
miRNA:   3'- -UGA-ACCGGU-GCG---------------CUUUcGUCGCGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.