miRNA display CGI


Results 1 - 20 of 196 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14614 3' -55.7 NC_003521.1 + 222025 1.09 0.004515
Target:  5'- cACUUGGCCACGCGAAAGCAGCGCUGGc -3'
miRNA:   3'- -UGAACCGGUGCGCUUUCGUCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 168534 0.85 0.155515
Target:  5'- gGCUggcGGCCAgCGCGgcGGCGGCGCUGGc -3'
miRNA:   3'- -UGAa--CCGGU-GCGCuuUCGUCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 60685 0.78 0.386552
Target:  5'- uGCUgcGGCCGCGCGGgggacccggGGGCGGCGCgGGu -3'
miRNA:   3'- -UGAa-CCGGUGCGCU---------UUCGUCGCGaCC- -5'
14614 3' -55.7 NC_003521.1 + 49674 0.77 0.464371
Target:  5'- ---gGGCCGgGCGAgcGCGGCGCUGu -3'
miRNA:   3'- ugaaCCGGUgCGCUuuCGUCGCGACc -5'
14614 3' -55.7 NC_003521.1 + 110337 0.76 0.50812
Target:  5'- ---aGGCCACGCGugacaggucgccgaAGAGCaggAGCGCUGGc -3'
miRNA:   3'- ugaaCCGGUGCGC--------------UUUCG---UCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 54300 0.76 0.520532
Target:  5'- gGC-UGGCCACGU-AGAGCAGCGCg-- -3'
miRNA:   3'- -UGaACCGGUGCGcUUUCGUCGCGacc -5'
14614 3' -55.7 NC_003521.1 + 64211 0.75 0.539851
Target:  5'- uGC-UGGCCACGC---AGCAGCGCgaGGa -3'
miRNA:   3'- -UGaACCGGUGCGcuuUCGUCGCGa-CC- -5'
14614 3' -55.7 NC_003521.1 + 144060 0.75 0.549602
Target:  5'- uGCaUGGCCGaGCu--GGCGGCGCUGGg -3'
miRNA:   3'- -UGaACCGGUgCGcuuUCGUCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 212643 0.75 0.559407
Target:  5'- gACUUGGCCAUGCGAcccgaagaGGGCGuCGCgGGc -3'
miRNA:   3'- -UGAACCGGUGCGCU--------UUCGUcGCGaCC- -5'
14614 3' -55.7 NC_003521.1 + 179326 0.75 0.579156
Target:  5'- --gUGGCCACGCGA--GUAGCgGCUGa -3'
miRNA:   3'- ugaACCGGUGCGCUuuCGUCG-CGACc -5'
14614 3' -55.7 NC_003521.1 + 101396 0.74 0.589088
Target:  5'- cGCUUgacGGCCACGCagGAGAGCccguGCgGCUGGa -3'
miRNA:   3'- -UGAA---CCGGUGCG--CUUUCGu---CG-CGACC- -5'
14614 3' -55.7 NC_003521.1 + 95794 0.74 0.599049
Target:  5'- cGCUcGGCCACGCGAc--CAGCGCgucGGc -3'
miRNA:   3'- -UGAaCCGGUGCGCUuucGUCGCGa--CC- -5'
14614 3' -55.7 NC_003521.1 + 186761 0.74 0.609035
Target:  5'- gGCUcGGCgGCaucgGCGGAGGCGGCGgUGGu -3'
miRNA:   3'- -UGAaCCGgUG----CGCUUUCGUCGCgACC- -5'
14614 3' -55.7 NC_003521.1 + 199575 0.74 0.609035
Target:  5'- cACgaGGCCACGUucguccccAGCAGUGCUGGu -3'
miRNA:   3'- -UGaaCCGGUGCGcuu-----UCGUCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 186619 0.74 0.609035
Target:  5'- ---gGGCUACGCGgcGGCGGUGgUGGc -3'
miRNA:   3'- ugaaCCGGUGCGCuuUCGUCGCgACC- -5'
14614 3' -55.7 NC_003521.1 + 74752 0.74 0.629047
Target:  5'- cGCUaUGGCCcUGCGGGAGUGGaUGCUGGc -3'
miRNA:   3'- -UGA-ACCGGuGCGCUUUCGUC-GCGACC- -5'
14614 3' -55.7 NC_003521.1 + 98328 0.73 0.639061
Target:  5'- ---cGGCCACGaCGguGGUuGCGCUGGc -3'
miRNA:   3'- ugaaCCGGUGC-GCuuUCGuCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 215197 0.73 0.639061
Target:  5'- --gUGGUCACGCGccAGCAGCGCc-- -3'
miRNA:   3'- ugaACCGGUGCGCuuUCGUCGCGacc -5'
14614 3' -55.7 NC_003521.1 + 117479 0.73 0.669039
Target:  5'- ---aGGCCACG-Gcc-GCGGCGCUGGg -3'
miRNA:   3'- ugaaCCGGUGCgCuuuCGUCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 19153 0.72 0.698758
Target:  5'- gGCgUGGUgAC-CGAGAGCacGGCGCUGGu -3'
miRNA:   3'- -UGaACCGgUGcGCUUUCG--UCGCGACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.