miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14614 3' -55.7 NC_003521.1 + 174504 0.72 0.698758
Target:  5'- gACUgcagGGCCGCGau--GGCcGCGCUGGu -3'
miRNA:   3'- -UGAa---CCGGUGCgcuuUCGuCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 91327 0.72 0.708569
Target:  5'- cGCggGGgCACGCGcAGGCgaGGUGCUGGu -3'
miRNA:   3'- -UGaaCCgGUGCGCuUUCG--UCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 43473 0.72 0.708569
Target:  5'- ---gGGCCAgCGCGgcGGCcGUGCUGGc -3'
miRNA:   3'- ugaaCCGGU-GCGCuuUCGuCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 150964 0.72 0.708569
Target:  5'- ----aGUCGCGCGAc-GCGGCGCUGGc -3'
miRNA:   3'- ugaacCGGUGCGCUuuCGUCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 98953 0.72 0.718317
Target:  5'- cACUgagGGCCugGUGGcuggugAGGCGGUGCcGGg -3'
miRNA:   3'- -UGAa--CCGGugCGCU------UUCGUCGCGaCC- -5'
14614 3' -55.7 NC_003521.1 + 74536 0.72 0.718317
Target:  5'- aACgaGGCCACGCGGAccAGCcGCGCc-- -3'
miRNA:   3'- -UGaaCCGGUGCGCUU--UCGuCGCGacc -5'
14614 3' -55.7 NC_003521.1 + 209037 0.72 0.718317
Target:  5'- uACUcGGCCuucUGCGAGuGCGGCGaCUGGc -3'
miRNA:   3'- -UGAaCCGGu--GCGCUUuCGUCGC-GACC- -5'
14614 3' -55.7 NC_003521.1 + 85751 0.72 0.718317
Target:  5'- aACUUGGCCAUgaGCGAGguGGCcAGCGCc-- -3'
miRNA:   3'- -UGAACCGGUG--CGCUU--UCG-UCGCGacc -5'
14614 3' -55.7 NC_003521.1 + 183588 0.72 0.718317
Target:  5'- --cUGGCCGCGCGAGAGC--CGCUc- -3'
miRNA:   3'- ugaACCGGUGCGCUUUCGucGCGAcc -5'
14614 3' -55.7 NC_003521.1 + 97353 0.72 0.737594
Target:  5'- uGCUUG--CGCGCGAucuuGAGCAcGCGCUGGc -3'
miRNA:   3'- -UGAACcgGUGCGCU----UUCGU-CGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 13918 0.72 0.737594
Target:  5'- ---gGGCC--GCGGAGGCcGCGCUGGc -3'
miRNA:   3'- ugaaCCGGugCGCUUUCGuCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 128063 0.72 0.737594
Target:  5'- gACgc-GCCGCGCGAugccgcccauGGGCucGCGCUGGa -3'
miRNA:   3'- -UGaacCGGUGCGCU----------UUCGu-CGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 149604 0.71 0.747104
Target:  5'- gGCUgcacGCCcucauGCGCGAAA-CGGCGCUGGa -3'
miRNA:   3'- -UGAac--CGG-----UGCGCUUUcGUCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 197338 0.71 0.747104
Target:  5'- -gUUGGCCGcCGCGGccAGCAcggccgccGCGCUGGc -3'
miRNA:   3'- ugAACCGGU-GCGCUu-UCGU--------CGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 171279 0.71 0.756519
Target:  5'- --gUGGCCugcgcuguauccGCGUgggcugGAAGGCGGUGCUGGg -3'
miRNA:   3'- ugaACCGG------------UGCG------CUUUCGUCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 197145 0.71 0.765827
Target:  5'- gACgUGGCCcUGCuGGAAGUuccGCGCUGGg -3'
miRNA:   3'- -UGaACCGGuGCG-CUUUCGu--CGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 127958 0.71 0.775023
Target:  5'- ---cGGCCAgcCGCGGGAGCA--GCUGGg -3'
miRNA:   3'- ugaaCCGGU--GCGCUUUCGUcgCGACC- -5'
14614 3' -55.7 NC_003521.1 + 17141 0.71 0.783194
Target:  5'- gACgagUGGUUccagcagcgGCGCGAGGccgaggcGCAGCGCUGGc -3'
miRNA:   3'- -UGa--ACCGG---------UGCGCUUU-------CGUCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 13847 0.71 0.784096
Target:  5'- uAUUUGGCUcgGCGCGGgggucucugcGGGCGGCGCcgccaUGGa -3'
miRNA:   3'- -UGAACCGG--UGCGCU----------UUCGUCGCG-----ACC- -5'
14614 3' -55.7 NC_003521.1 + 110752 0.71 0.784096
Target:  5'- cACUcGGCCA-GCGAGAGCAGgcCGC-GGa -3'
miRNA:   3'- -UGAaCCGGUgCGCUUUCGUC--GCGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.