miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14614 3' -55.7 NC_003521.1 + 49674 0.77 0.464371
Target:  5'- ---gGGCCGgGCGAgcGCGGCGCUGu -3'
miRNA:   3'- ugaaCCGGUgCGCUuuCGUCGCGACc -5'
14614 3' -55.7 NC_003521.1 + 171279 0.71 0.756519
Target:  5'- --gUGGCCugcgcuguauccGCGUgggcugGAAGGCGGUGCUGGg -3'
miRNA:   3'- ugaACCGG------------UGCG------CUUUCGUCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 17141 0.71 0.783194
Target:  5'- gACgagUGGUUccagcagcgGCGCGAGGccgaggcGCAGCGCUGGc -3'
miRNA:   3'- -UGa--ACCGG---------UGCGCUUU-------CGUCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 204891 0.66 0.965802
Target:  5'- -aUUGGCCGCGCGgcGGgA-CGgUGGc -3'
miRNA:   3'- ugAACCGGUGCGCuuUCgUcGCgACC- -5'
14614 3' -55.7 NC_003521.1 + 199575 0.74 0.609035
Target:  5'- cACgaGGCCACGUucguccccAGCAGUGCUGGu -3'
miRNA:   3'- -UGaaCCGGUGCGcuu-----UCGUCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 186619 0.74 0.609035
Target:  5'- ---gGGCUACGCGgcGGCGGUGgUGGc -3'
miRNA:   3'- ugaaCCGGUGCGCuuUCGUCGCgACC- -5'
14614 3' -55.7 NC_003521.1 + 74752 0.74 0.629047
Target:  5'- cGCUaUGGCCcUGCGGGAGUGGaUGCUGGc -3'
miRNA:   3'- -UGA-ACCGGuGCGCUUUCGUC-GCGACC- -5'
14614 3' -55.7 NC_003521.1 + 98328 0.73 0.639061
Target:  5'- ---cGGCCACGaCGguGGUuGCGCUGGc -3'
miRNA:   3'- ugaaCCGGUGC-GCuuUCGuCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 98953 0.72 0.718317
Target:  5'- cACUgagGGCCugGUGGcuggugAGGCGGUGCcGGg -3'
miRNA:   3'- -UGAa--CCGGugCGCU------UUCGUCGCGaCC- -5'
14614 3' -55.7 NC_003521.1 + 197338 0.71 0.747104
Target:  5'- -gUUGGCCGcCGCGGccAGCAcggccgccGCGCUGGc -3'
miRNA:   3'- ugAACCGGU-GCGCUu-UCGU--------CGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 183588 0.72 0.718317
Target:  5'- --cUGGCCGCGCGAGAGC--CGCUc- -3'
miRNA:   3'- ugaACCGGUGCGCUUUCGucGCGAcc -5'
14614 3' -55.7 NC_003521.1 + 74536 0.72 0.718317
Target:  5'- aACgaGGCCACGCGGAccAGCcGCGCc-- -3'
miRNA:   3'- -UGaaCCGGUGCGCUU--UCGuCGCGacc -5'
14614 3' -55.7 NC_003521.1 + 212643 0.75 0.559407
Target:  5'- gACUUGGCCAUGCGAcccgaagaGGGCGuCGCgGGc -3'
miRNA:   3'- -UGAACCGGUGCGCU--------UUCGUcGCGaCC- -5'
14614 3' -55.7 NC_003521.1 + 13918 0.72 0.737594
Target:  5'- ---gGGCC--GCGGAGGCcGCGCUGGc -3'
miRNA:   3'- ugaaCCGGugCGCUUUCGuCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 179326 0.75 0.579156
Target:  5'- --gUGGCCACGCGA--GUAGCgGCUGa -3'
miRNA:   3'- ugaACCGGUGCGCUuuCGUCG-CGACc -5'
14614 3' -55.7 NC_003521.1 + 117479 0.73 0.669039
Target:  5'- ---aGGCCACG-Gcc-GCGGCGCUGGg -3'
miRNA:   3'- ugaaCCGGUGCgCuuuCGUCGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 97353 0.72 0.737594
Target:  5'- uGCUUG--CGCGCGAucuuGAGCAcGCGCUGGc -3'
miRNA:   3'- -UGAACcgGUGCGCU----UUCGU-CGCGACC- -5'
14614 3' -55.7 NC_003521.1 + 127958 0.71 0.775023
Target:  5'- ---cGGCCAgcCGCGGGAGCA--GCUGGg -3'
miRNA:   3'- ugaaCCGGU--GCGCUUUCGUcgCGACC- -5'
14614 3' -55.7 NC_003521.1 + 95794 0.74 0.599049
Target:  5'- cGCUcGGCCACGCGAc--CAGCGCgucGGc -3'
miRNA:   3'- -UGAaCCGGUGCGCUuucGUCGCGa--CC- -5'
14614 3' -55.7 NC_003521.1 + 186761 0.74 0.609035
Target:  5'- gGCUcGGCgGCaucgGCGGAGGCGGCGgUGGu -3'
miRNA:   3'- -UGAaCCGgUG----CGCUUUCGUCGCgACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.