miRNA display CGI


Results 61 - 80 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 3' -60.3 NC_003521.1 + 169777 0.68 0.748138
Target:  5'- -gGCGCCGCgcuuUGGGCGCucGAGGGaCUAu -3'
miRNA:   3'- ggUGCGGCG----ACCCGUGc-UUCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 204099 0.68 0.739029
Target:  5'- aCCGCGuaGUUGggguaggcgugcGGCACGAAGGGcaCCAu -3'
miRNA:   3'- -GGUGCggCGAC------------CCGUGCUUCCCa-GGU- -5'
14615 3' -60.3 NC_003521.1 + 192940 0.68 0.739029
Target:  5'- gCCGCGCC-CUGGGaCACu--GGG-CCAu -3'
miRNA:   3'- -GGUGCGGcGACCC-GUGcuuCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 115324 0.68 0.733525
Target:  5'- aCCACGaCGCUGGGCcugauggagaccaagAUGAAGGG-Cg- -3'
miRNA:   3'- -GGUGCgGCGACCCG---------------UGCUUCCCaGgu -5'
14615 3' -60.3 NC_003521.1 + 129548 0.68 0.72984
Target:  5'- gCgGCGgCGCU-GGCACGgcGGGcCCGa -3'
miRNA:   3'- -GgUGCgGCGAcCCGUGCuuCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 224429 0.68 0.72984
Target:  5'- -gGCGCUGCgUGGuGgGCGAGcGGUCCAg -3'
miRNA:   3'- ggUGCGGCG-ACC-CgUGCUUcCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 55972 0.68 0.72984
Target:  5'- aCCACGCCGaugugcagGGGC-CGcAGccGGUCCAc -3'
miRNA:   3'- -GGUGCGGCga------CCCGuGCuUC--CCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 113312 0.68 0.720575
Target:  5'- uUCACGCUcucggaccuGCUGGGCcaagacgcCGggGGGcuUCCAg -3'
miRNA:   3'- -GGUGCGG---------CGACCCGu-------GCuuCCC--AGGU- -5'
14615 3' -60.3 NC_003521.1 + 76225 0.68 0.720575
Target:  5'- gCACGCC-CUGGGCGCGcac-GUCCu -3'
miRNA:   3'- gGUGCGGcGACCCGUGCuuccCAGGu -5'
14615 3' -60.3 NC_003521.1 + 14724 0.68 0.711244
Target:  5'- gCACGCCGUgguaucuguUGGGCGUGAcGGG-CCGg -3'
miRNA:   3'- gGUGCGGCG---------ACCCGUGCUuCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 224610 0.68 0.711244
Target:  5'- gCCAgGCgGCaGGGCGCcgccaccucGAAGGG-CCAg -3'
miRNA:   3'- -GGUgCGgCGaCCCGUG---------CUUCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 155551 0.69 0.701853
Target:  5'- uCCACGUCaGCcGGcGCGCGGAGcGGguagCCAg -3'
miRNA:   3'- -GGUGCGG-CGaCC-CGUGCUUC-CCa---GGU- -5'
14615 3' -60.3 NC_003521.1 + 146358 0.69 0.701853
Target:  5'- aCCGCGCCGUacacgGGGCGguucCGGguacAGGGaUCCGc -3'
miRNA:   3'- -GGUGCGGCGa----CCCGU----GCU----UCCC-AGGU- -5'
14615 3' -60.3 NC_003521.1 + 148874 0.69 0.701853
Target:  5'- cCCuCGCCGCcacgGGGUccgcCGccGGGUCCAc -3'
miRNA:   3'- -GGuGCGGCGa---CCCGu---GCuuCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 156883 0.69 0.701853
Target:  5'- cCgGCgGCCGCUGcccgauGGCACGggGGGcgacgggCCGg -3'
miRNA:   3'- -GgUG-CGGCGAC------CCGUGCuuCCCa------GGU- -5'
14615 3' -60.3 NC_003521.1 + 125301 0.69 0.692411
Target:  5'- gCCGCGUCGUUcGcGGaCGCGGcgguGGGUCCGg -3'
miRNA:   3'- -GGUGCGGCGA-C-CC-GUGCUu---CCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 200882 0.69 0.692411
Target:  5'- aUACGCUGCUGGaGCugcugGCGGAGGacaUCCAc -3'
miRNA:   3'- gGUGCGGCGACC-CG-----UGCUUCCc--AGGU- -5'
14615 3' -60.3 NC_003521.1 + 172165 0.69 0.682925
Target:  5'- uCCACGCU-CUGcGGCugGAagauGGGGUCg- -3'
miRNA:   3'- -GGUGCGGcGAC-CCGugCU----UCCCAGgu -5'
14615 3' -60.3 NC_003521.1 + 212241 0.69 0.682925
Target:  5'- gUCGCGCuCGCcggGGGaCACGuuccugaacacGGGGUCCAc -3'
miRNA:   3'- -GGUGCG-GCGa--CCC-GUGCu----------UCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 87415 0.69 0.681974
Target:  5'- aCCACGCCGgUGGcgcaccuGCACGAGGaGaUCCu -3'
miRNA:   3'- -GGUGCGGCgACC-------CGUGCUUC-CcAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.