miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 3' -60.3 NC_003521.1 + 115324 0.68 0.733525
Target:  5'- aCCACGaCGCUGGGCcugauggagaccaagAUGAAGGG-Cg- -3'
miRNA:   3'- -GGUGCgGCGACCCG---------------UGCUUCCCaGgu -5'
14615 3' -60.3 NC_003521.1 + 117487 0.66 0.825179
Target:  5'- gCCGCGgCGCUGGGgC-CGucGGuGUUCGg -3'
miRNA:   3'- -GGUGCgGCGACCC-GuGCuuCC-CAGGU- -5'
14615 3' -60.3 NC_003521.1 + 118920 0.67 0.792182
Target:  5'- uCgGCGCCGCggcgUGGGCGgCGGcgucccgucAGGG-CCAg -3'
miRNA:   3'- -GgUGCGGCG----ACCCGU-GCU---------UCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 119335 0.7 0.635083
Target:  5'- gCACGCgGUcGGGCA---GGGGUCCGg -3'
miRNA:   3'- gGUGCGgCGaCCCGUgcuUCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 122255 0.7 0.648521
Target:  5'- gCCACGUCGCUGGGCgucuacuuacauacuACGGcccaagccgcguGGGGaaUCCc -3'
miRNA:   3'- -GGUGCGGCGACCCG---------------UGCU------------UCCC--AGGu -5'
14615 3' -60.3 NC_003521.1 + 123057 0.72 0.485181
Target:  5'- aCCAUGCUGCUGGGacggcggcgGCGGAGGaGcUCCGu -3'
miRNA:   3'- -GGUGCGGCGACCCg--------UGCUUCC-C-AGGU- -5'
14615 3' -60.3 NC_003521.1 + 125301 0.69 0.692411
Target:  5'- gCCGCGUCGUUcGcGGaCGCGGcgguGGGUCCGg -3'
miRNA:   3'- -GGUGCGGCGA-C-CC-GUGCUu---CCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 127276 0.66 0.848329
Target:  5'- cUCGCGCUGgUGgucgucccGGCGCGAGGGaUCCc -3'
miRNA:   3'- -GGUGCGGCgAC--------CCGUGCUUCCcAGGu -5'
14615 3' -60.3 NC_003521.1 + 127668 0.69 0.673402
Target:  5'- uCUugGCCGCga-GCagGCGgcGGGUCCAg -3'
miRNA:   3'- -GGugCGGCGaccCG--UGCuuCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 129548 0.68 0.72984
Target:  5'- gCgGCGgCGCU-GGCACGgcGGGcCCGa -3'
miRNA:   3'- -GgUGCgGCGAcCCGUGCuuCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 132431 0.67 0.774894
Target:  5'- gCgACGCCGCUGGuaGCGGugguGGGcuguucggcgcgUCCGg -3'
miRNA:   3'- -GgUGCGGCGACCcgUGCUu---CCC------------AGGU- -5'
14615 3' -60.3 NC_003521.1 + 134077 0.72 0.485181
Target:  5'- -gGCGCC-CUGGaCGCGGAGGuGUCCAu -3'
miRNA:   3'- ggUGCGGcGACCcGUGCUUCC-CAGGU- -5'
14615 3' -60.3 NC_003521.1 + 135618 0.7 0.632203
Target:  5'- gCCGCGCaGCUcgcGGGCggaucccacgaucgGCGggGGGcCCAg -3'
miRNA:   3'- -GGUGCGgCGA---CCCG--------------UGCuuCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 139920 0.69 0.672448
Target:  5'- gCGCGCUGCUccucgGGGCACGGccggaAGGccagcucGUCCAg -3'
miRNA:   3'- gGUGCGGCGA-----CCCGUGCU-----UCC-------CAGGU- -5'
14615 3' -60.3 NC_003521.1 + 141211 0.66 0.825179
Target:  5'- gCUGCGCCGCcGGGCGCugcaGGUCa- -3'
miRNA:   3'- -GGUGCGGCGaCCCGUGcuucCCAGgu -5'
14615 3' -60.3 NC_003521.1 + 141479 0.66 0.862909
Target:  5'- ---aGCCGCUucuccGGGCGCGAGGuGcCCAc -3'
miRNA:   3'- ggugCGGCGA-----CCCGUGCUUCcCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 146358 0.69 0.701853
Target:  5'- aCCGCGCCGUacacgGGGCGguucCGGguacAGGGaUCCGc -3'
miRNA:   3'- -GGUGCGGCGa----CCCGU----GCU----UCCC-AGGU- -5'
14615 3' -60.3 NC_003521.1 + 148874 0.69 0.701853
Target:  5'- cCCuCGCCGCcacgGGGUccgcCGccGGGUCCAc -3'
miRNA:   3'- -GGuGCGGCGa---CCCGu---GCuuCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 149414 0.66 0.855708
Target:  5'- gCACgGUCGCccugUGGGC-CGGgauuugggucgGGGGUCCGg -3'
miRNA:   3'- gGUG-CGGCG----ACCCGuGCU-----------UCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 150506 0.67 0.774017
Target:  5'- aCgGCGCCgGCgGGGCccugcuaggaGCGGgagccguGGGGUCCGg -3'
miRNA:   3'- -GgUGCGG-CGaCCCG----------UGCU-------UCCCAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.