miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 3' -60.3 NC_003521.1 + 58895 0.66 0.848329
Target:  5'- aCCGCaucguaGCC-CUGGGCGCGuuGGGagCCc -3'
miRNA:   3'- -GGUG------CGGcGACCCGUGCuuCCCa-GGu -5'
14615 3' -60.3 NC_003521.1 + 65022 0.67 0.766077
Target:  5'- aCCAUGCCGCccaGGGC-CGAggcuguGGGGUaugCCu -3'
miRNA:   3'- -GGUGCGGCGa--CCCGuGCU------UCCCA---GGu -5'
14615 3' -60.3 NC_003521.1 + 70357 0.68 0.748138
Target:  5'- gCCGCGCUagucgGCgacaugacugGGGCGCGAGGGGa--- -3'
miRNA:   3'- -GGUGCGG-----CGa---------CCCGUGCUUCCCaggu -5'
14615 3' -60.3 NC_003521.1 + 74071 0.66 0.825179
Target:  5'- aCGCGCCGCUGucuGGCggGCGA--GGUCUu -3'
miRNA:   3'- gGUGCGGCGAC---CCG--UGCUucCCAGGu -5'
14615 3' -60.3 NC_003521.1 + 76225 0.68 0.720575
Target:  5'- gCACGCC-CUGGGCGCGcac-GUCCu -3'
miRNA:   3'- gGUGCGGcGACCCGUGCuuccCAGGu -5'
14615 3' -60.3 NC_003521.1 + 82632 0.66 0.855708
Target:  5'- aCACGCCGCcGG--AgGAGGGcGUCCGc -3'
miRNA:   3'- gGUGCGGCGaCCcgUgCUUCC-CAGGU- -5'
14615 3' -60.3 NC_003521.1 + 83702 0.66 0.825179
Target:  5'- aCGCGCgaGC-GGGCGucCaAGGGGUCCAg -3'
miRNA:   3'- gGUGCGg-CGaCCCGU--GcUUCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 85598 0.66 0.824382
Target:  5'- aCCACGgacuccaCCGa-GGGCGCGAagAGGG-CCGa -3'
miRNA:   3'- -GGUGC-------GGCgaCCCGUGCU--UCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 86518 0.66 0.848329
Target:  5'- gCCAUGUCGCcgaUGGGCACGuucuuGGG-Ca- -3'
miRNA:   3'- -GGUGCGGCG---ACCCGUGCuu---CCCaGgu -5'
14615 3' -60.3 NC_003521.1 + 87415 0.69 0.681974
Target:  5'- aCCACGCCGgUGGcgcaccuGCACGAGGaGaUCCu -3'
miRNA:   3'- -GGUGCGGCgACC-------CGUGCUUC-CcAGGu -5'
14615 3' -60.3 NC_003521.1 + 88184 0.66 0.862909
Target:  5'- aCgGCGUCGCUGaGCAUcAGGuGGUCCu -3'
miRNA:   3'- -GgUGCGGCGACcCGUGcUUC-CCAGGu -5'
14615 3' -60.3 NC_003521.1 + 89999 0.66 0.817144
Target:  5'- -gGCGCUGCgGGGaCACGuuguuucGGUCCAg -3'
miRNA:   3'- ggUGCGGCGaCCC-GUGCuuc----CCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 91250 0.67 0.792182
Target:  5'- aCCACGUagaUGGGCACGGGcGGGaaaCCGg -3'
miRNA:   3'- -GGUGCGgcgACCCGUGCUU-CCCa--GGU- -5'
14615 3' -60.3 NC_003521.1 + 92019 0.67 0.808962
Target:  5'- -gGCGCgGCgGcGGCgGCGguGGGUCCGg -3'
miRNA:   3'- ggUGCGgCGaC-CCG-UGCuuCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 95261 0.66 0.855708
Target:  5'- gCCGCaGCaCGUUcuGCACGAAgGGGUCCu -3'
miRNA:   3'- -GGUG-CG-GCGAccCGUGCUU-CCCAGGu -5'
14615 3' -60.3 NC_003521.1 + 98526 0.78 0.244654
Target:  5'- gCGCGCgGCUGGGCcgcugcagcgGCGgcGGGUCCc -3'
miRNA:   3'- gGUGCGgCGACCCG----------UGCuuCCCAGGu -5'
14615 3' -60.3 NC_003521.1 + 100711 0.73 0.476299
Target:  5'- gCCGCgGCCGCUGauGGaggagGCGggGGGUUCAu -3'
miRNA:   3'- -GGUG-CGGCGAC--CCg----UGCuuCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 101953 0.75 0.361634
Target:  5'- uCCAgGCUGUucucgGGGUGCGAgauGGGGUCCAg -3'
miRNA:   3'- -GGUgCGGCGa----CCCGUGCU---UCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 112789 0.66 0.862909
Target:  5'- gCugGCCGCcuacGGGCACGcgcucuGGGacggCCGc -3'
miRNA:   3'- gGugCGGCGa---CCCGUGCuu----CCCa---GGU- -5'
14615 3' -60.3 NC_003521.1 + 113312 0.68 0.720575
Target:  5'- uUCACGCUcucggaccuGCUGGGCcaagacgcCGggGGGcuUCCAg -3'
miRNA:   3'- -GGUGCGG---------CGACCCGu-------GCuuCCC--AGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.