miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 3' -60.3 NC_003521.1 + 1785 0.67 0.808962
Target:  5'- aCgGCGCCGCgaccaGGUcCG-GGGGUCCGg -3'
miRNA:   3'- -GgUGCGGCGac---CCGuGCuUCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 7954 0.67 0.808962
Target:  5'- uCCAgauCGCCGC-GGuGuCGCGGccgggAGGGUCCGc -3'
miRNA:   3'- -GGU---GCGGCGaCC-C-GUGCU-----UCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 11756 0.7 0.641804
Target:  5'- uCCACGCCGcCUGGGUGacugccuucguccuCGuGGGGUUCc -3'
miRNA:   3'- -GGUGCGGC-GACCCGU--------------GCuUCCCAGGu -5'
14615 3' -60.3 NC_003521.1 + 12203 0.67 0.800639
Target:  5'- gCGCGCCGCgGGGuucuccucaCugGAGucGGGUUCGa -3'
miRNA:   3'- gGUGCGGCGaCCC---------GugCUU--CCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 13188 0.66 0.840777
Target:  5'- aCCAggcgUGCCGCUcGGGCcgccguguUGGAGGG-CCGa -3'
miRNA:   3'- -GGU----GCGGCGA-CCCGu-------GCUUCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 13472 0.66 0.816333
Target:  5'- -aGCGCCGUcgacggucUGGGCgACGGggaacguGGGGUCUu -3'
miRNA:   3'- ggUGCGGCG--------ACCCG-UGCU-------UCCCAGGu -5'
14615 3' -60.3 NC_003521.1 + 13884 0.67 0.7998
Target:  5'- gCCAuggauuuCGCCGggGGGCccggcGCGGAGGGggCCGc -3'
miRNA:   3'- -GGU-------GCGGCgaCCCG-----UGCUUCCCa-GGU- -5'
14615 3' -60.3 NC_003521.1 + 14227 0.67 0.800639
Target:  5'- -gACGCCGCUGGGCuACGccGuGaUCCu -3'
miRNA:   3'- ggUGCGGCGACCCG-UGCuuC-CcAGGu -5'
14615 3' -60.3 NC_003521.1 + 14724 0.68 0.711244
Target:  5'- gCACGCCGUgguaucuguUGGGCGUGAcGGG-CCGg -3'
miRNA:   3'- gGUGCGGCG---------ACCCGUGCUuCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 15667 0.72 0.485181
Target:  5'- -aGCGCCGaggUGGuGCGCGAcuGGGUCCGc -3'
miRNA:   3'- ggUGCGGCg--ACC-CGUGCUu-CCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 17417 0.66 0.855708
Target:  5'- -gACGCCGCgccgGGGCgccacacggcccGCGucGGGgcgCCGc -3'
miRNA:   3'- ggUGCGGCGa---CCCG------------UGCuuCCCa--GGU- -5'
14615 3' -60.3 NC_003521.1 + 23732 0.68 0.748138
Target:  5'- cCCAUGUCGCUGGGCGgcCGAcuguuccuGGG-CUAc -3'
miRNA:   3'- -GGUGCGGCGACCCGU--GCUu-------CCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 24279 0.66 0.855708
Target:  5'- cCCugGCCGCUGcacugugcuGGCucgaGCGAuucGaGGUCCu -3'
miRNA:   3'- -GGugCGGCGAC---------CCG----UGCUu--C-CCAGGu -5'
14615 3' -60.3 NC_003521.1 + 34653 0.66 0.825179
Target:  5'- cCCugGCCGCccugcuccUGGGCuucuCGGAGGccuuUCCc -3'
miRNA:   3'- -GGugCGGCG--------ACCCGu---GCUUCCc---AGGu -5'
14615 3' -60.3 NC_003521.1 + 38636 0.71 0.568181
Target:  5'- gCGCGCCgGCUGGGUguccCGc-GGGUCCGu -3'
miRNA:   3'- gGUGCGG-CGACCCGu---GCuuCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 45293 0.67 0.774894
Target:  5'- -gGCGCCGCUGGGCcAgGAGccGGaGcCCGa -3'
miRNA:   3'- ggUGCGGCGACCCG-UgCUU--CC-CaGGU- -5'
14615 3' -60.3 NC_003521.1 + 45638 0.69 0.654274
Target:  5'- gCCAcCGCCGCc-GGCucCGcGGGGUCCGg -3'
miRNA:   3'- -GGU-GCGGCGacCCGu-GCuUCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 48599 0.69 0.663849
Target:  5'- cCCGCGgCGCcGGGuCGCaaGAaacAGGGUCCGc -3'
miRNA:   3'- -GGUGCgGCGaCCC-GUG--CU---UCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 53348 0.71 0.568181
Target:  5'- aCCACGCCgGC-GcGGCgGCGGAGGGgCCGa -3'
miRNA:   3'- -GGUGCGG-CGaC-CCG-UGCUUCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 55972 0.68 0.72984
Target:  5'- aCCACGCCGaugugcagGGGC-CGcAGccGGUCCAc -3'
miRNA:   3'- -GGUGCGGCga------CCCGuGCuUC--CCAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.