miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 3' -60.3 NC_003521.1 + 238863 0.71 0.568181
Target:  5'- gCGCGCCgGCUGGGUguccCGc-GGGUCCGu -3'
miRNA:   3'- gGUGCGG-CGACCCGu---GCuuCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 226843 0.7 0.635083
Target:  5'- cCCGcCGCCGCgccGGGCAgGcccaucAGGGcGUCCAg -3'
miRNA:   3'- -GGU-GCGGCGa--CCCGUgC------UUCC-CAGGU- -5'
14615 3' -60.3 NC_003521.1 + 225968 0.66 0.825179
Target:  5'- gUCACGCUGUUGGccacgcgccGCACGuagugguuGGGGUCg- -3'
miRNA:   3'- -GGUGCGGCGACC---------CGUGCu-------UCCCAGgu -5'
14615 3' -60.3 NC_003521.1 + 225784 0.67 0.783598
Target:  5'- cUCGCGCCGCUcgucaGGGUGCc-AGGcGUCCu -3'
miRNA:   3'- -GGUGCGGCGA-----CCCGUGcuUCC-CAGGu -5'
14615 3' -60.3 NC_003521.1 + 224610 0.68 0.711244
Target:  5'- gCCAgGCgGCaGGGCGCcgccaccucGAAGGG-CCAg -3'
miRNA:   3'- -GGUgCGgCGaCCCGUG---------CUUCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 224429 0.68 0.72984
Target:  5'- -gGCGCUGCgUGGuGgGCGAGcGGUCCAg -3'
miRNA:   3'- ggUGCGGCG-ACC-CgUGCUUcCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 224273 0.69 0.663849
Target:  5'- gCGCGCC-CUcacccaGGuGCACGcAGGGUCCGu -3'
miRNA:   3'- gGUGCGGcGA------CC-CGUGCuUCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 224135 0.67 0.800639
Target:  5'- uCCAgGCCG-UGGGC-CGAGucGGG-CCAg -3'
miRNA:   3'- -GGUgCGGCgACCCGuGCUU--CCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 223696 0.67 0.80648
Target:  5'- gCGCGCCGgcaggaucgacgacCUcgccGGGUACGAcggcGGGUCCGg -3'
miRNA:   3'- gGUGCGGC--------------GA----CCCGUGCUu---CCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 222746 0.74 0.407599
Target:  5'- gCGCGCCGuCUGGGCuACGGccacggcgucgguGGGGUCg- -3'
miRNA:   3'- gGUGCGGC-GACCCG-UGCU-------------UCCCAGgu -5'
14615 3' -60.3 NC_003521.1 + 222511 1.1 0.001867
Target:  5'- aCCACGCCGCUGGGCACGAAGGGUCCAu -3'
miRNA:   3'- -GGUGCGGCGACCCGUGCUUCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 218469 0.67 0.800639
Target:  5'- aCCACGCCG-UGGGCGC--AGuGGcCCc -3'
miRNA:   3'- -GGUGCGGCgACCCGUGcuUC-CCaGGu -5'
14615 3' -60.3 NC_003521.1 + 212241 0.69 0.682925
Target:  5'- gUCGCGCuCGCcggGGGaCACGuuccugaacacGGGGUCCAc -3'
miRNA:   3'- -GGUGCG-GCGa--CCC-GUGCu----------UCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 211332 0.69 0.654274
Target:  5'- -gGCGgucCCGC-GGGCGCGAgugguuGGGGUCCc -3'
miRNA:   3'- ggUGC---GGCGaCCCGUGCU------UCCCAGGu -5'
14615 3' -60.3 NC_003521.1 + 209549 0.66 0.840777
Target:  5'- -uGCGCCcgGCgGGGUggcgGCGAcgguggcgGGGGUCCGg -3'
miRNA:   3'- ggUGCGG--CGaCCCG----UGCU--------UCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 206623 0.66 0.862909
Target:  5'- uCUACGCCGCccuggUGGGCcACGAuaAGcuGGUCa- -3'
miRNA:   3'- -GGUGCGGCG-----ACCCG-UGCU--UC--CCAGgu -5'
14615 3' -60.3 NC_003521.1 + 204579 0.71 0.577664
Target:  5'- aCCACGUCGCgcccGGCAguCGGuaguccugcucGGGGUCCAu -3'
miRNA:   3'- -GGUGCGGCGac--CCGU--GCU-----------UCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 204099 0.68 0.739029
Target:  5'- aCCGCGuaGUUGggguaggcgugcGGCACGAAGGGcaCCAu -3'
miRNA:   3'- -GGUGCggCGAC------------CCGUGCUUCCCa-GGU- -5'
14615 3' -60.3 NC_003521.1 + 202012 0.67 0.808962
Target:  5'- aCgGCGCCGCgaccaGGUcCG-GGGGUCCGg -3'
miRNA:   3'- -GgUGCGGCGac---CCGuGCuUCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 200882 0.69 0.692411
Target:  5'- aUACGCUGCUGGaGCugcugGCGGAGGacaUCCAc -3'
miRNA:   3'- gGUGCGGCGACC-CG-----UGCUUCCc--AGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.