miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 3' -60.3 NC_003521.1 + 222511 1.1 0.001867
Target:  5'- aCCACGCCGCUGGGCACGAAGGGUCCAu -3'
miRNA:   3'- -GGUGCGGCGACCCGUGCUUCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 174679 0.84 0.10644
Target:  5'- gCGCGCUGC-GGGUGCGAGGGGUCCc -3'
miRNA:   3'- gGUGCGGCGaCCCGUGCUUCCCAGGu -5'
14615 3' -60.3 NC_003521.1 + 98526 0.78 0.244654
Target:  5'- gCGCGCgGCUGGGCcgcugcagcgGCGgcGGGUCCc -3'
miRNA:   3'- gGUGCGgCGACCCG----------UGCuuCCCAGGu -5'
14615 3' -60.3 NC_003521.1 + 153102 0.75 0.338971
Target:  5'- aCCACGCCGCcGGGCGCGcgcgacggcagcAGGcggcuuuGGUCCAc -3'
miRNA:   3'- -GGUGCGGCGaCCCGUGC------------UUC-------CCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 101953 0.75 0.361634
Target:  5'- uCCAgGCUGUucucgGGGUGCGAgauGGGGUCCAg -3'
miRNA:   3'- -GGUgCGGCGa----CCCGUGCU---UCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 222746 0.74 0.407599
Target:  5'- gCGCGCCGuCUGGGCuACGGccacggcgucgguGGGGUCg- -3'
miRNA:   3'- gGUGCGGC-GACCCG-UGCU-------------UCCCAGgu -5'
14615 3' -60.3 NC_003521.1 + 100711 0.73 0.476299
Target:  5'- gCCGCgGCCGCUGauGGaggagGCGggGGGUUCAu -3'
miRNA:   3'- -GGUG-CGGCGAC--CCg----UGCuuCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 15667 0.72 0.485181
Target:  5'- -aGCGCCGaggUGGuGCGCGAcuGGGUCCGc -3'
miRNA:   3'- ggUGCGGCg--ACC-CGUGCUu-CCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 123057 0.72 0.485181
Target:  5'- aCCAUGCUGCUGGGacggcggcgGCGGAGGaGcUCCGu -3'
miRNA:   3'- -GGUGCGGCGACCCg--------UGCUUCC-C-AGGU- -5'
14615 3' -60.3 NC_003521.1 + 134077 0.72 0.485181
Target:  5'- -gGCGCC-CUGGaCGCGGAGGuGUCCAu -3'
miRNA:   3'- ggUGCGGcGACCcGUGCUUCC-CAGGU- -5'
14615 3' -60.3 NC_003521.1 + 53348 0.71 0.568181
Target:  5'- aCCACGCCgGC-GcGGCgGCGGAGGGgCCGa -3'
miRNA:   3'- -GGUGCGG-CGaC-CCG-UGCUUCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 38636 0.71 0.568181
Target:  5'- gCGCGCCgGCUGGGUguccCGc-GGGUCCGu -3'
miRNA:   3'- gGUGCGG-CGACCCGu---GCuuCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 238863 0.71 0.568181
Target:  5'- gCGCGCCgGCUGGGUguccCGc-GGGUCCGu -3'
miRNA:   3'- gGUGCGG-CGACCCGu---GCuuCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 204579 0.71 0.577664
Target:  5'- aCCACGUCGCgcccGGCAguCGGuaguccugcucGGGGUCCAu -3'
miRNA:   3'- -GGUGCGGCGac--CCGU--GCU-----------UCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 176540 0.71 0.587182
Target:  5'- gCCGCGCUGC-GGG---GAGGGGUCCu -3'
miRNA:   3'- -GGUGCGGCGaCCCgugCUUCCCAGGu -5'
14615 3' -60.3 NC_003521.1 + 196656 0.7 0.606298
Target:  5'- gCACGuCCaGCUGGGUGCGca-GGUCCAc -3'
miRNA:   3'- gGUGC-GG-CGACCCGUGCuucCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 135618 0.7 0.632203
Target:  5'- gCCGCGCaGCUcgcGGGCggaucccacgaucgGCGggGGGcCCAg -3'
miRNA:   3'- -GGUGCGgCGA---CCCG--------------UGCuuCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 226843 0.7 0.635083
Target:  5'- cCCGcCGCCGCgccGGGCAgGcccaucAGGGcGUCCAg -3'
miRNA:   3'- -GGU-GCGGCGa--CCCGUgC------UUCC-CAGGU- -5'
14615 3' -60.3 NC_003521.1 + 119335 0.7 0.635083
Target:  5'- gCACGCgGUcGGGCA---GGGGUCCGg -3'
miRNA:   3'- gGUGCGgCGaCCCGUgcuUCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 11756 0.7 0.641804
Target:  5'- uCCACGCCGcCUGGGUGacugccuucguccuCGuGGGGUUCc -3'
miRNA:   3'- -GGUGCGGC-GACCCGU--------------GCuUCCCAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.