miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 3' -60.3 NC_003521.1 + 122255 0.7 0.648521
Target:  5'- gCCACGUCGCUGGGCgucuacuuacauacuACGGcccaagccgcguGGGGaaUCCc -3'
miRNA:   3'- -GGUGCGGCGACCCG---------------UGCU------------UCCC--AGGu -5'
14615 3' -60.3 NC_003521.1 + 45638 0.69 0.654274
Target:  5'- gCCAcCGCCGCc-GGCucCGcGGGGUCCGg -3'
miRNA:   3'- -GGU-GCGGCGacCCGu-GCuUCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 211332 0.69 0.654274
Target:  5'- -gGCGgucCCGC-GGGCGCGAgugguuGGGGUCCc -3'
miRNA:   3'- ggUGC---GGCGaCCCGUGCU------UCCCAGGu -5'
14615 3' -60.3 NC_003521.1 + 48599 0.69 0.663849
Target:  5'- cCCGCGgCGCcGGGuCGCaaGAaacAGGGUCCGc -3'
miRNA:   3'- -GGUGCgGCGaCCC-GUG--CU---UCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 224273 0.69 0.663849
Target:  5'- gCGCGCC-CUcacccaGGuGCACGcAGGGUCCGu -3'
miRNA:   3'- gGUGCGGcGA------CC-CGUGCuUCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 139920 0.69 0.672448
Target:  5'- gCGCGCUGCUccucgGGGCACGGccggaAGGccagcucGUCCAg -3'
miRNA:   3'- gGUGCGGCGA-----CCCGUGCU-----UCC-------CAGGU- -5'
14615 3' -60.3 NC_003521.1 + 127668 0.69 0.673402
Target:  5'- uCUugGCCGCga-GCagGCGgcGGGUCCAg -3'
miRNA:   3'- -GGugCGGCGaccCG--UGCuuCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 87415 0.69 0.681974
Target:  5'- aCCACGCCGgUGGcgcaccuGCACGAGGaGaUCCu -3'
miRNA:   3'- -GGUGCGGCgACC-------CGUGCUUC-CcAGGu -5'
14615 3' -60.3 NC_003521.1 + 172165 0.69 0.682925
Target:  5'- uCCACGCU-CUGcGGCugGAagauGGGGUCg- -3'
miRNA:   3'- -GGUGCGGcGAC-CCGugCU----UCCCAGgu -5'
14615 3' -60.3 NC_003521.1 + 212241 0.69 0.682925
Target:  5'- gUCGCGCuCGCcggGGGaCACGuuccugaacacGGGGUCCAc -3'
miRNA:   3'- -GGUGCG-GCGa--CCC-GUGCu----------UCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 200882 0.69 0.692411
Target:  5'- aUACGCUGCUGGaGCugcugGCGGAGGacaUCCAc -3'
miRNA:   3'- gGUGCGGCGACC-CG-----UGCUUCCc--AGGU- -5'
14615 3' -60.3 NC_003521.1 + 125301 0.69 0.692411
Target:  5'- gCCGCGUCGUUcGcGGaCGCGGcgguGGGUCCGg -3'
miRNA:   3'- -GGUGCGGCGA-C-CC-GUGCUu---CCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 156883 0.69 0.701853
Target:  5'- cCgGCgGCCGCUGcccgauGGCACGggGGGcgacgggCCGg -3'
miRNA:   3'- -GgUG-CGGCGAC------CCGUGCuuCCCa------GGU- -5'
14615 3' -60.3 NC_003521.1 + 155551 0.69 0.701853
Target:  5'- uCCACGUCaGCcGGcGCGCGGAGcGGguagCCAg -3'
miRNA:   3'- -GGUGCGG-CGaCC-CGUGCUUC-CCa---GGU- -5'
14615 3' -60.3 NC_003521.1 + 148874 0.69 0.701853
Target:  5'- cCCuCGCCGCcacgGGGUccgcCGccGGGUCCAc -3'
miRNA:   3'- -GGuGCGGCGa---CCCGu---GCuuCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 146358 0.69 0.701853
Target:  5'- aCCGCGCCGUacacgGGGCGguucCGGguacAGGGaUCCGc -3'
miRNA:   3'- -GGUGCGGCGa----CCCGU----GCU----UCCC-AGGU- -5'
14615 3' -60.3 NC_003521.1 + 14724 0.68 0.711244
Target:  5'- gCACGCCGUgguaucuguUGGGCGUGAcGGG-CCGg -3'
miRNA:   3'- gGUGCGGCG---------ACCCGUGCUuCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 224610 0.68 0.711244
Target:  5'- gCCAgGCgGCaGGGCGCcgccaccucGAAGGG-CCAg -3'
miRNA:   3'- -GGUgCGgCGaCCCGUG---------CUUCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 113312 0.68 0.720575
Target:  5'- uUCACGCUcucggaccuGCUGGGCcaagacgcCGggGGGcuUCCAg -3'
miRNA:   3'- -GGUGCGG---------CGACCCGu-------GCuuCCC--AGGU- -5'
14615 3' -60.3 NC_003521.1 + 76225 0.68 0.720575
Target:  5'- gCACGCC-CUGGGCGCGcac-GUCCu -3'
miRNA:   3'- gGUGCGGcGACCCGUGCuuccCAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.