miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 3' -60.3 NC_003521.1 + 74071 0.66 0.825179
Target:  5'- aCGCGCCGCUGucuGGCggGCGA--GGUCUu -3'
miRNA:   3'- gGUGCGGCGAC---CCG--UGCUucCCAGGu -5'
14615 3' -60.3 NC_003521.1 + 13472 0.66 0.816333
Target:  5'- -aGCGCCGUcgacggucUGGGCgACGGggaacguGGGGUCUu -3'
miRNA:   3'- ggUGCGGCG--------ACCCG-UGCU-------UCCCAGGu -5'
14615 3' -60.3 NC_003521.1 + 183333 0.66 0.833058
Target:  5'- gCGCGCCGUcaUGGGCAaGAAGuG-CCAc -3'
miRNA:   3'- gGUGCGGCG--ACCCGUgCUUCcCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 141211 0.66 0.825179
Target:  5'- gCUGCGCCGCcGGGCGCugcaGGUCa- -3'
miRNA:   3'- -GGUGCGGCGaCCCGUGcuucCCAGgu -5'
14615 3' -60.3 NC_003521.1 + 112789 0.66 0.862909
Target:  5'- gCugGCCGCcuacGGGCACGcgcucuGGGacggCCGc -3'
miRNA:   3'- gGugCGGCGa---CCCGUGCuu----CCCa---GGU- -5'
14615 3' -60.3 NC_003521.1 + 155653 0.66 0.862909
Target:  5'- -aGCGCCguGCUGGGUggcgGCGGAG-GUCUg -3'
miRNA:   3'- ggUGCGG--CGACCCG----UGCUUCcCAGGu -5'
14615 3' -60.3 NC_003521.1 + 141479 0.66 0.862909
Target:  5'- ---aGCCGCUucuccGGGCGCGAGGuGcCCAc -3'
miRNA:   3'- ggugCGGCGA-----CCCGUGCUUCcCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 117487 0.66 0.825179
Target:  5'- gCCGCGgCGCUGGGgC-CGucGGuGUUCGg -3'
miRNA:   3'- -GGUGCgGCGACCC-GuGCuuCC-CAGGU- -5'
14615 3' -60.3 NC_003521.1 + 34653 0.66 0.825179
Target:  5'- cCCugGCCGCccugcuccUGGGCuucuCGGAGGccuuUCCc -3'
miRNA:   3'- -GGugCGGCG--------ACCCGu---GCUUCCc---AGGu -5'
14615 3' -60.3 NC_003521.1 + 88184 0.66 0.862909
Target:  5'- aCgGCGUCGCUGaGCAUcAGGuGGUCCu -3'
miRNA:   3'- -GgUGCGGCGACcCGUGcUUC-CCAGGu -5'
14615 3' -60.3 NC_003521.1 + 179608 0.66 0.848329
Target:  5'- gCCGCuGCUGCUGcGCgugaugucGCGGAucacGGGUCCAc -3'
miRNA:   3'- -GGUG-CGGCGACcCG--------UGCUU----CCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 13188 0.66 0.840777
Target:  5'- aCCAggcgUGCCGCUcGGGCcgccguguUGGAGGG-CCGa -3'
miRNA:   3'- -GGU----GCGGCGA-CCCGu-------GCUUCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 58895 0.66 0.848329
Target:  5'- aCCGCaucguaGCC-CUGGGCGCGuuGGGagCCc -3'
miRNA:   3'- -GGUG------CGGcGACCCGUGCuuCCCa-GGu -5'
14615 3' -60.3 NC_003521.1 + 127276 0.66 0.848329
Target:  5'- cUCGCGCUGgUGgucgucccGGCGCGAGGGaUCCc -3'
miRNA:   3'- -GGUGCGGCgAC--------CCGUGCUUCCcAGGu -5'
14615 3' -60.3 NC_003521.1 + 12203 0.67 0.800639
Target:  5'- gCGCGCCGCgGGGuucuccucaCugGAGucGGGUUCGa -3'
miRNA:   3'- gGUGCGGCGaCCC---------GugCUU--CCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 218469 0.67 0.800639
Target:  5'- aCCACGCCG-UGGGCGC--AGuGGcCCc -3'
miRNA:   3'- -GGUGCGGCgACCCGUGcuUC-CCaGGu -5'
14615 3' -60.3 NC_003521.1 + 118920 0.67 0.792182
Target:  5'- uCgGCGCCGCggcgUGGGCGgCGGcgucccgucAGGG-CCAg -3'
miRNA:   3'- -GgUGCGGCG----ACCCGU-GCU---------UCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 225784 0.67 0.783598
Target:  5'- cUCGCGCCGCUcgucaGGGUGCc-AGGcGUCCu -3'
miRNA:   3'- -GGUGCGGCGA-----CCCGUGcuUCC-CAGGu -5'
14615 3' -60.3 NC_003521.1 + 65022 0.67 0.766077
Target:  5'- aCCAUGCCGCccaGGGC-CGAggcuguGGGGUaugCCu -3'
miRNA:   3'- -GGUGCGGCGa--CCCGuGCU------UCCCA---GGu -5'
14615 3' -60.3 NC_003521.1 + 187047 0.67 0.766077
Target:  5'- --gUGCgGCUaacGGGCGgGAAGGGUgCCAg -3'
miRNA:   3'- gguGCGgCGA---CCCGUgCUUCCCA-GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.