miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 3' -60.3 NC_003521.1 + 209549 0.66 0.840777
Target:  5'- -uGCGCCcgGCgGGGUggcgGCGAcgguggcgGGGGUCCGg -3'
miRNA:   3'- ggUGCGG--CGaCCCG----UGCU--------UCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 89999 0.66 0.817144
Target:  5'- -gGCGCUGCgGGGaCACGuuguuucGGUCCAg -3'
miRNA:   3'- ggUGCGGCGaCCC-GUGCuuc----CCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 85598 0.66 0.824382
Target:  5'- aCCACGgacuccaCCGa-GGGCGCGAagAGGG-CCGa -3'
miRNA:   3'- -GGUGC-------GGCgaCCCGUGCU--UCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 225968 0.66 0.825179
Target:  5'- gUCACGCUGUUGGccacgcgccGCACGuagugguuGGGGUCg- -3'
miRNA:   3'- -GGUGCGGCGACC---------CGUGCu-------UCCCAGgu -5'
14615 3' -60.3 NC_003521.1 + 83702 0.66 0.825179
Target:  5'- aCGCGCgaGC-GGGCGucCaAGGGGUCCAg -3'
miRNA:   3'- gGUGCGg-CGaCCCGU--GcUUCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 86518 0.66 0.848329
Target:  5'- gCCAUGUCGCcgaUGGGCACGuucuuGGG-Ca- -3'
miRNA:   3'- -GGUGCGGCG---ACCCGUGCuu---CCCaGgu -5'
14615 3' -60.3 NC_003521.1 + 184845 0.66 0.851301
Target:  5'- cUCGCGCCGCUGcgacugccgaccccaGGCACaGcAGcGUCCAc -3'
miRNA:   3'- -GGUGCGGCGAC---------------CCGUG-CuUCcCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 82632 0.66 0.855708
Target:  5'- aCACGCCGCcGG--AgGAGGGcGUCCGc -3'
miRNA:   3'- gGUGCGGCGaCCcgUgCUUCC-CAGGU- -5'
14615 3' -60.3 NC_003521.1 + 88184 0.66 0.862909
Target:  5'- aCgGCGUCGCUGaGCAUcAGGuGGUCCu -3'
miRNA:   3'- -GgUGCGGCGACcCGUGcUUC-CCAGGu -5'
14615 3' -60.3 NC_003521.1 + 206623 0.66 0.862909
Target:  5'- uCUACGCCGCccuggUGGGCcACGAuaAGcuGGUCa- -3'
miRNA:   3'- -GGUGCGGCG-----ACCCG-UGCU--UC--CCAGgu -5'
14615 3' -60.3 NC_003521.1 + 117487 0.66 0.825179
Target:  5'- gCCGCGgCGCUGGGgC-CGucGGuGUUCGg -3'
miRNA:   3'- -GGUGCgGCGACCC-GuGCuuCC-CAGGU- -5'
14615 3' -60.3 NC_003521.1 + 13472 0.66 0.816333
Target:  5'- -aGCGCCGUcgacggucUGGGCgACGGggaacguGGGGUCUu -3'
miRNA:   3'- ggUGCGGCG--------ACCCG-UGCU-------UCCCAGGu -5'
14615 3' -60.3 NC_003521.1 + 155653 0.66 0.862909
Target:  5'- -aGCGCCguGCUGGGUggcgGCGGAG-GUCUg -3'
miRNA:   3'- ggUGCGG--CGACCCG----UGCUUCcCAGGu -5'
14615 3' -60.3 NC_003521.1 + 141211 0.66 0.825179
Target:  5'- gCUGCGCCGCcGGGCGCugcaGGUCa- -3'
miRNA:   3'- -GGUGCGGCGaCCCGUGcuucCCAGgu -5'
14615 3' -60.3 NC_003521.1 + 155283 0.66 0.817144
Target:  5'- gCC-CGUCGCUGGGCaACGccauGGGcUUCGg -3'
miRNA:   3'- -GGuGCGGCGACCCG-UGCuu--CCC-AGGU- -5'
14615 3' -60.3 NC_003521.1 + 183333 0.66 0.833058
Target:  5'- gCGCGCCGUcaUGGGCAaGAAGuG-CCAc -3'
miRNA:   3'- gGUGCGGCG--ACCCGUgCUUCcCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 34653 0.66 0.825179
Target:  5'- cCCugGCCGCccugcuccUGGGCuucuCGGAGGccuuUCCc -3'
miRNA:   3'- -GGugCGGCG--------ACCCGu---GCUUCCc---AGGu -5'
14615 3' -60.3 NC_003521.1 + 112789 0.66 0.862909
Target:  5'- gCugGCCGCcuacGGGCACGcgcucuGGGacggCCGc -3'
miRNA:   3'- gGugCGGCGa---CCCGUGCuu----CCCa---GGU- -5'
14615 3' -60.3 NC_003521.1 + 74071 0.66 0.825179
Target:  5'- aCGCGCCGCUGucuGGCggGCGA--GGUCUu -3'
miRNA:   3'- gGUGCGGCGAC---CCG--UGCUucCCAGGu -5'
14615 3' -60.3 NC_003521.1 + 198768 0.66 0.825179
Target:  5'- gUCGCGCCGCucgUGGGCGaGguGGGUagCAg -3'
miRNA:   3'- -GGUGCGGCG---ACCCGUgCuuCCCAg-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.