miRNA display CGI


Results 1 - 20 of 107 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 3' -60.3 NC_003521.1 + 224429 0.68 0.72984
Target:  5'- -gGCGCUGCgUGGuGgGCGAGcGGUCCAg -3'
miRNA:   3'- ggUGCGGCG-ACC-CgUGCUUcCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 224273 0.69 0.663849
Target:  5'- gCGCGCC-CUcacccaGGuGCACGcAGGGUCCGu -3'
miRNA:   3'- gGUGCGGcGA------CC-CGUGCuUCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 139920 0.69 0.672448
Target:  5'- gCGCGCUGCUccucgGGGCACGGccggaAGGccagcucGUCCAg -3'
miRNA:   3'- gGUGCGGCGA-----CCCGUGCU-----UCC-------CAGGU- -5'
14615 3' -60.3 NC_003521.1 + 125301 0.69 0.692411
Target:  5'- gCCGCGUCGUUcGcGGaCGCGGcgguGGGUCCGg -3'
miRNA:   3'- -GGUGCGGCGA-C-CC-GUGCUu---CCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 224610 0.68 0.711244
Target:  5'- gCCAgGCgGCaGGGCGCcgccaccucGAAGGG-CCAg -3'
miRNA:   3'- -GGUgCGgCGaCCCGUG---------CUUCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 76225 0.68 0.720575
Target:  5'- gCACGCC-CUGGGCGCGcac-GUCCu -3'
miRNA:   3'- gGUGCGGcGACCCGUGCuuccCAGGu -5'
14615 3' -60.3 NC_003521.1 + 113312 0.68 0.720575
Target:  5'- uUCACGCUcucggaccuGCUGGGCcaagacgcCGggGGGcuUCCAg -3'
miRNA:   3'- -GGUGCGG---------CGACCCGu-------GCuuCCC--AGGU- -5'
14615 3' -60.3 NC_003521.1 + 129548 0.68 0.72984
Target:  5'- gCgGCGgCGCU-GGCACGgcGGGcCCGa -3'
miRNA:   3'- -GgUGCgGCGAcCCGUGCuuCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 55972 0.68 0.72984
Target:  5'- aCCACGCCGaugugcagGGGC-CGcAGccGGUCCAc -3'
miRNA:   3'- -GGUGCGGCga------CCCGuGCuUC--CCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 45638 0.69 0.654274
Target:  5'- gCCAcCGCCGCc-GGCucCGcGGGGUCCGg -3'
miRNA:   3'- -GGU-GCGGCGacCCGu-GCuUCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 122255 0.7 0.648521
Target:  5'- gCCACGUCGCUGGGCgucuacuuacauacuACGGcccaagccgcguGGGGaaUCCc -3'
miRNA:   3'- -GGUGCGGCGACCCG---------------UGCU------------UCCC--AGGu -5'
14615 3' -60.3 NC_003521.1 + 11756 0.7 0.641804
Target:  5'- uCCACGCCGcCUGGGUGacugccuucguccuCGuGGGGUUCc -3'
miRNA:   3'- -GGUGCGGC-GACCCGU--------------GCuUCCCAGGu -5'
14615 3' -60.3 NC_003521.1 + 153102 0.75 0.338971
Target:  5'- aCCACGCCGCcGGGCGCGcgcgacggcagcAGGcggcuuuGGUCCAc -3'
miRNA:   3'- -GGUGCGGCGaCCCGUGC------------UUC-------CCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 101953 0.75 0.361634
Target:  5'- uCCAgGCUGUucucgGGGUGCGAgauGGGGUCCAg -3'
miRNA:   3'- -GGUgCGGCGa----CCCGUGCU---UCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 222746 0.74 0.407599
Target:  5'- gCGCGCCGuCUGGGCuACGGccacggcgucgguGGGGUCg- -3'
miRNA:   3'- gGUGCGGC-GACCCG-UGCU-------------UCCCAGgu -5'
14615 3' -60.3 NC_003521.1 + 100711 0.73 0.476299
Target:  5'- gCCGCgGCCGCUGauGGaggagGCGggGGGUUCAu -3'
miRNA:   3'- -GGUG-CGGCGAC--CCg----UGCuuCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 134077 0.72 0.485181
Target:  5'- -gGCGCC-CUGGaCGCGGAGGuGUCCAu -3'
miRNA:   3'- ggUGCGGcGACCcGUGCUUCC-CAGGU- -5'
14615 3' -60.3 NC_003521.1 + 238863 0.71 0.568181
Target:  5'- gCGCGCCgGCUGGGUguccCGc-GGGUCCGu -3'
miRNA:   3'- gGUGCGG-CGACCCGu---GCuuCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 119335 0.7 0.635083
Target:  5'- gCACGCgGUcGGGCA---GGGGUCCGg -3'
miRNA:   3'- gGUGCGgCGaCCCGUgcuUCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 226843 0.7 0.635083
Target:  5'- cCCGcCGCCGCgccGGGCAgGcccaucAGGGcGUCCAg -3'
miRNA:   3'- -GGU-GCGGCGa--CCCGUgC------UUCC-CAGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.