miRNA display CGI


Results 1 - 20 of 107 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 3' -60.3 NC_003521.1 + 174679 0.84 0.10644
Target:  5'- gCGCGCUGC-GGGUGCGAGGGGUCCc -3'
miRNA:   3'- gGUGCGGCGaCCCGUGCUUCCCAGGu -5'
14615 3' -60.3 NC_003521.1 + 146358 0.69 0.701853
Target:  5'- aCCGCGCCGUacacgGGGCGguucCGGguacAGGGaUCCGc -3'
miRNA:   3'- -GGUGCGGCGa----CCCGU----GCU----UCCC-AGGU- -5'
14615 3' -60.3 NC_003521.1 + 155551 0.69 0.701853
Target:  5'- uCCACGUCaGCcGGcGCGCGGAGcGGguagCCAg -3'
miRNA:   3'- -GGUGCGG-CGaCC-CGUGCUUC-CCa---GGU- -5'
14615 3' -60.3 NC_003521.1 + 206623 0.66 0.862909
Target:  5'- uCUACGCCGCccuggUGGGCcACGAuaAGcuGGUCa- -3'
miRNA:   3'- -GGUGCGGCG-----ACCCG-UGCU--UC--CCAGgu -5'
14615 3' -60.3 NC_003521.1 + 38636 0.71 0.568181
Target:  5'- gCGCGCCgGCUGGGUguccCGc-GGGUCCGu -3'
miRNA:   3'- gGUGCGG-CGACCCGu---GCuuCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 53348 0.71 0.568181
Target:  5'- aCCACGCCgGC-GcGGCgGCGGAGGGgCCGa -3'
miRNA:   3'- -GGUGCGG-CGaC-CCG-UGCUUCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 176540 0.71 0.587182
Target:  5'- gCCGCGCUGC-GGG---GAGGGGUCCu -3'
miRNA:   3'- -GGUGCGGCGaCCCgugCUUCCCAGGu -5'
14615 3' -60.3 NC_003521.1 + 196656 0.7 0.606298
Target:  5'- gCACGuCCaGCUGGGUGCGca-GGUCCAc -3'
miRNA:   3'- gGUGC-GG-CGACCCGUGCuucCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 48599 0.69 0.663849
Target:  5'- cCCGCGgCGCcGGGuCGCaaGAaacAGGGUCCGc -3'
miRNA:   3'- -GGUGCgGCGaCCC-GUG--CU---UCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 200882 0.69 0.692411
Target:  5'- aUACGCUGCUGGaGCugcugGCGGAGGacaUCCAc -3'
miRNA:   3'- gGUGCGGCGACC-CG-----UGCUUCCc--AGGU- -5'
14615 3' -60.3 NC_003521.1 + 87415 0.69 0.681974
Target:  5'- aCCACGCCGgUGGcgcaccuGCACGAGGaGaUCCu -3'
miRNA:   3'- -GGUGCGGCgACC-------CGUGCUUC-CcAGGu -5'
14615 3' -60.3 NC_003521.1 + 211332 0.69 0.654274
Target:  5'- -gGCGgucCCGC-GGGCGCGAgugguuGGGGUCCc -3'
miRNA:   3'- ggUGC---GGCGaCCCGUGCU------UCCCAGGu -5'
14615 3' -60.3 NC_003521.1 + 98526 0.78 0.244654
Target:  5'- gCGCGCgGCUGGGCcgcugcagcgGCGgcGGGUCCc -3'
miRNA:   3'- gGUGCGgCGACCCG----------UGCuuCCCAGGu -5'
14615 3' -60.3 NC_003521.1 + 172165 0.69 0.682925
Target:  5'- uCCACGCU-CUGcGGCugGAagauGGGGUCg- -3'
miRNA:   3'- -GGUGCGGcGAC-CCGugCU----UCCCAGgu -5'
14615 3' -60.3 NC_003521.1 + 123057 0.72 0.485181
Target:  5'- aCCAUGCUGCUGGGacggcggcgGCGGAGGaGcUCCGu -3'
miRNA:   3'- -GGUGCGGCGACCCg--------UGCUUCC-C-AGGU- -5'
14615 3' -60.3 NC_003521.1 + 135618 0.7 0.632203
Target:  5'- gCCGCGCaGCUcgcGGGCggaucccacgaucgGCGggGGGcCCAg -3'
miRNA:   3'- -GGUGCGgCGA---CCCG--------------UGCuuCCCaGGU- -5'
14615 3' -60.3 NC_003521.1 + 212241 0.69 0.682925
Target:  5'- gUCGCGCuCGCcggGGGaCACGuuccugaacacGGGGUCCAc -3'
miRNA:   3'- -GGUGCG-GCGa--CCC-GUGCu----------UCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 148874 0.69 0.701853
Target:  5'- cCCuCGCCGCcacgGGGUccgcCGccGGGUCCAc -3'
miRNA:   3'- -GGuGCGGCGa---CCCGu---GCuuCCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 15667 0.72 0.485181
Target:  5'- -aGCGCCGaggUGGuGCGCGAcuGGGUCCGc -3'
miRNA:   3'- ggUGCGGCg--ACC-CGUGCUu-CCCAGGU- -5'
14615 3' -60.3 NC_003521.1 + 204579 0.71 0.577664
Target:  5'- aCCACGUCGCgcccGGCAguCGGuaguccugcucGGGGUCCAu -3'
miRNA:   3'- -GGUGCGGCGac--CCGU--GCU-----------UCCCAGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.