miRNA display CGI


Results 41 - 60 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 5' -54.7 NC_003521.1 + 58902 0.67 0.953027
Target:  5'- cGUAGCCCugggcgCGUugggaGCCCugACCugGUAUa -3'
miRNA:   3'- uCAUCGGGua----GUA-----CGGG--UGGugCAUG- -5'
14615 5' -54.7 NC_003521.1 + 21537 0.67 0.953027
Target:  5'- -cUGGCCU-UCAUggGCCCGCuCAUGUGCc -3'
miRNA:   3'- ucAUCGGGuAGUA--CGGGUG-GUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 214618 0.67 0.948959
Target:  5'- gGGUAGCCCA----GCCagACCAgCGUGCu -3'
miRNA:   3'- -UCAUCGGGUaguaCGGg-UGGU-GCAUG- -5'
14615 5' -54.7 NC_003521.1 + 132715 0.67 0.948959
Target:  5'- cGUAGCCCc-CAUGCCCAagucCCcaaGCGcUACa -3'
miRNA:   3'- uCAUCGGGuaGUACGGGU----GG---UGC-AUG- -5'
14615 5' -54.7 NC_003521.1 + 61862 0.67 0.948959
Target:  5'- cGgcGCCUGUcCAUGCgaCCACCACGgauaGCg -3'
miRNA:   3'- uCauCGGGUA-GUACG--GGUGGUGCa---UG- -5'
14615 5' -54.7 NC_003521.1 + 211761 0.67 0.948959
Target:  5'- cGUAGCCCGagAUGUCCgGCCAgGg-- -3'
miRNA:   3'- uCAUCGGGUagUACGGG-UGGUgCaug -5'
14615 5' -54.7 NC_003521.1 + 136793 0.67 0.944663
Target:  5'- --gGGCUCAcggUCAcgcUGCCCGCCgacgaccccgGCGUGCg -3'
miRNA:   3'- ucaUCGGGU---AGU---ACGGGUGG----------UGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 212484 0.67 0.944663
Target:  5'- cGUGGCCCAcacgcaCAUGgCCgacgagACCACGUAg -3'
miRNA:   3'- uCAUCGGGUa-----GUACgGG------UGGUGCAUg -5'
14615 5' -54.7 NC_003521.1 + 29100 0.67 0.944663
Target:  5'- uGgcGUCCAgugCGUGaUCCGCCACGgcgGCa -3'
miRNA:   3'- uCauCGGGUa--GUAC-GGGUGGUGCa--UG- -5'
14615 5' -54.7 NC_003521.1 + 41114 0.67 0.944663
Target:  5'- uGGU-GCUgGUCAcccaguugcUGUCCaACCACGUGCa -3'
miRNA:   3'- -UCAuCGGgUAGU---------ACGGG-UGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 36730 0.67 0.944663
Target:  5'- cAGUGGCgCCAcCAggugcacgugGCCCACgACGUGu -3'
miRNA:   3'- -UCAUCG-GGUaGUa---------CGGGUGgUGCAUg -5'
14615 5' -54.7 NC_003521.1 + 126024 0.68 0.93538
Target:  5'- uGUAGUCCAugaucccgaaggUCGUGUcgccgggcuCCACCACGcUACg -3'
miRNA:   3'- uCAUCGGGU------------AGUACG---------GGUGGUGC-AUG- -5'
14615 5' -54.7 NC_003521.1 + 77845 0.68 0.93538
Target:  5'- --gGGCCaccCGUGCCCACCACu--- -3'
miRNA:   3'- ucaUCGGguaGUACGGGUGGUGcaug -5'
14615 5' -54.7 NC_003521.1 + 91521 0.68 0.93538
Target:  5'- cGGcGGCCgCGUCGUcgcGCuCCAgCACGUACu -3'
miRNA:   3'- -UCaUCGG-GUAGUA---CG-GGUgGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 173255 0.68 0.93538
Target:  5'- -cUGGCCCG-CGggGCCCGCCGCcugACa -3'
miRNA:   3'- ucAUCGGGUaGUa-CGGGUGGUGca-UG- -5'
14615 5' -54.7 NC_003521.1 + 113760 0.68 0.93538
Target:  5'- cGGUGGCCC----UGCCCggcACCGCGUc- -3'
miRNA:   3'- -UCAUCGGGuaguACGGG---UGGUGCAug -5'
14615 5' -54.7 NC_003521.1 + 130956 0.68 0.93538
Target:  5'- uGGUGGCCCcgCcgccGCCCGUCACGUc- -3'
miRNA:   3'- -UCAUCGGGuaGua--CGGGUGGUGCAug -5'
14615 5' -54.7 NC_003521.1 + 121476 0.68 0.930389
Target:  5'- cGU-GUCCAUgGaggccggaccccUGCCCgACCGCGUGCg -3'
miRNA:   3'- uCAuCGGGUAgU------------ACGGG-UGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 238042 0.68 0.930389
Target:  5'- --gGGCCCGUCcuAUGCUgGCUugGUGa -3'
miRNA:   3'- ucaUCGGGUAG--UACGGgUGGugCAUg -5'
14615 5' -54.7 NC_003521.1 + 49374 0.68 0.925164
Target:  5'- uGGUGGUagaUCAUCAgcagaucguccaUGCUCugCGCGUACu -3'
miRNA:   3'- -UCAUCG---GGUAGU------------ACGGGugGUGCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.