miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 5' -54.7 NC_003521.1 + 156193 0.66 0.967099
Target:  5'- cGGUGGCgCGUCAggaaGCCUacgucgaagggACgACGUGCg -3'
miRNA:   3'- -UCAUCGgGUAGUa---CGGG-----------UGgUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 152743 0.66 0.967099
Target:  5'- gAGUGGCCCGUgGUcacgggcgccGCcgaCCACCGCG-ACc -3'
miRNA:   3'- -UCAUCGGGUAgUA----------CG---GGUGGUGCaUG- -5'
14615 5' -54.7 NC_003521.1 + 153454 0.66 0.967099
Target:  5'- cGUAGgCCAgcg-GCUCgcagGCCACGUACa -3'
miRNA:   3'- uCAUCgGGUaguaCGGG----UGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 179436 0.66 0.967099
Target:  5'- uAGUGGUacuccaCCAaCGUGUCCACCagccgcuugACGUACu -3'
miRNA:   3'- -UCAUCG------GGUaGUACGGGUGG---------UGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 44884 0.66 0.965206
Target:  5'- uGUGGCCCAcgcaggacggcuaugUCcaGUGCCCGCgagcaGCGUGa -3'
miRNA:   3'- uCAUCGGGU---------------AG--UACGGGUGg----UGCAUg -5'
14615 5' -54.7 NC_003521.1 + 197653 0.66 0.963903
Target:  5'- cGGUGGCgC-UCGUGCggcagcagcgCCACCagcGCGUGCa -3'
miRNA:   3'- -UCAUCGgGuAGUACG----------GGUGG---UGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 15749 0.66 0.963903
Target:  5'- aGGUGcGCCCGggcagcagCAUGCCCgaGCUACGcgACc -3'
miRNA:   3'- -UCAU-CGGGUa-------GUACGGG--UGGUGCa-UG- -5'
14615 5' -54.7 NC_003521.1 + 129843 0.66 0.963903
Target:  5'- --gGGCCCGUggcCGUGCCCuGCUAC-UGCg -3'
miRNA:   3'- ucaUCGGGUA---GUACGGG-UGGUGcAUG- -5'
14615 5' -54.7 NC_003521.1 + 119154 0.67 0.960495
Target:  5'- aAGgAGCCCGaCGUGUacuaCACCACGUc- -3'
miRNA:   3'- -UCaUCGGGUaGUACGg---GUGGUGCAug -5'
14615 5' -54.7 NC_003521.1 + 83925 0.67 0.960495
Target:  5'- --cGGCCCGUC--GCCC-CC-CGUGCc -3'
miRNA:   3'- ucaUCGGGUAGuaCGGGuGGuGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 149263 0.67 0.960495
Target:  5'- cGUGGCCaUGUCGUuccgcgucggcGCCCACaagUACGUGCu -3'
miRNA:   3'- uCAUCGG-GUAGUA-----------CGGGUG---GUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 192484 0.67 0.960495
Target:  5'- cGGUcGGCUgAUCAccgUGUCCACgCugGUACu -3'
miRNA:   3'- -UCA-UCGGgUAGU---ACGGGUG-GugCAUG- -5'
14615 5' -54.7 NC_003521.1 + 85333 0.67 0.960495
Target:  5'- -uUGGCCCG-CG-GCCCGCCGCa--- -3'
miRNA:   3'- ucAUCGGGUaGUaCGGGUGGUGcaug -5'
14615 5' -54.7 NC_003521.1 + 226242 0.67 0.956871
Target:  5'- cGUAGCCCggCGUGUgCAgcuUCACGUcGCa -3'
miRNA:   3'- uCAUCGGGuaGUACGgGU---GGUGCA-UG- -5'
14615 5' -54.7 NC_003521.1 + 101878 0.67 0.956871
Target:  5'- aAGUAGCCguCGUCcugGUCCAUCuuGUACa -3'
miRNA:   3'- -UCAUCGG--GUAGua-CGGGUGGugCAUG- -5'
14615 5' -54.7 NC_003521.1 + 68717 0.67 0.956871
Target:  5'- cGUGGCgCCGUCGgccGCCCG-CACGgACu -3'
miRNA:   3'- uCAUCG-GGUAGUa--CGGGUgGUGCaUG- -5'
14615 5' -54.7 NC_003521.1 + 55934 0.67 0.956871
Target:  5'- aGGUgaAGCCCAggcgCAUGagCACCGUGUGCa -3'
miRNA:   3'- -UCA--UCGGGUa---GUACggGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 226552 0.67 0.956871
Target:  5'- -cUGGUCaCAguucCGUGUCUACCACGUAUa -3'
miRNA:   3'- ucAUCGG-GUa---GUACGGGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 174737 0.67 0.956871
Target:  5'- gGGcGGCCCAacgCAggGCUCgcucggcuGCCACGUACg -3'
miRNA:   3'- -UCaUCGGGUa--GUa-CGGG--------UGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 18310 0.67 0.953027
Target:  5'- -aUGGaCCCuUCGUGCCCAgCgGCGUGg -3'
miRNA:   3'- ucAUC-GGGuAGUACGGGU-GgUGCAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.