miRNA display CGI


Results 21 - 40 of 107 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 5' -54.7 NC_003521.1 + 49374 0.68 0.925164
Target:  5'- uGGUGGUagaUCAUCAgcagaucguccaUGCUCugCGCGUACu -3'
miRNA:   3'- -UCAUCG---GGUAGU------------ACGGGugGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 49872 0.69 0.910485
Target:  5'- aAGU-GCCCAUCAuccgUcgucuccccuacgucGCCCGCUACGUAa -3'
miRNA:   3'- -UCAuCGGGUAGU----A---------------CGGGUGGUGCAUg -5'
14615 5' -54.7 NC_003521.1 + 55934 0.67 0.956871
Target:  5'- aGGUgaAGCCCAggcgCAUGagCACCGUGUGCa -3'
miRNA:   3'- -UCA--UCGGGUa---GUACggGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 58902 0.67 0.953027
Target:  5'- cGUAGCCCugggcgCGUugggaGCCCugACCugGUAUa -3'
miRNA:   3'- uCAUCGGGua----GUA-----CGGG--UGGugCAUG- -5'
14615 5' -54.7 NC_003521.1 + 61862 0.67 0.948959
Target:  5'- cGgcGCCUGUcCAUGCgaCCACCACGgauaGCg -3'
miRNA:   3'- uCauCGGGUA-GUACG--GGUGGUGCa---UG- -5'
14615 5' -54.7 NC_003521.1 + 63406 0.69 0.908087
Target:  5'- gGGUAGUCgAguuuaCGgggaagcgGCCCGCCGCGUAUa -3'
miRNA:   3'- -UCAUCGGgUa----GUa-------CGGGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 68717 0.67 0.956871
Target:  5'- cGUGGCgCCGUCGgccGCCCG-CACGgACu -3'
miRNA:   3'- uCAUCG-GGUAGUa--CGGGUgGUGCaUG- -5'
14615 5' -54.7 NC_003521.1 + 75116 0.66 0.976467
Target:  5'- aGGUGGCCCGcacgguggacggcuuUCGgcgGCCgACCugGg-- -3'
miRNA:   3'- -UCAUCGGGU---------------AGUa--CGGgUGGugCaug -5'
14615 5' -54.7 NC_003521.1 + 75917 0.69 0.895547
Target:  5'- --gGGCaCGUUGUGCUCGCgCACGUACg -3'
miRNA:   3'- ucaUCGgGUAGUACGGGUG-GUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 76145 0.66 0.97548
Target:  5'- --cGGCCuCGUCGUcacgggGUUCACCACGUAg -3'
miRNA:   3'- ucaUCGG-GUAGUA------CGGGUGGUGCAUg -5'
14615 5' -54.7 NC_003521.1 + 77845 0.68 0.93538
Target:  5'- --gGGCCaccCGUGCCCACCACu--- -3'
miRNA:   3'- ucaUCGGguaGUACGGGUGGUGcaug -5'
14615 5' -54.7 NC_003521.1 + 78320 0.69 0.901931
Target:  5'- uGUAGCCgGUCAUGaaagaCGgCGCGUACc -3'
miRNA:   3'- uCAUCGGgUAGUACgg---GUgGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 83925 0.67 0.960495
Target:  5'- --cGGCCCGUC--GCCC-CC-CGUGCc -3'
miRNA:   3'- ucaUCGGGUAGuaCGGGuGGuGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 84900 0.66 0.96832
Target:  5'- gAGUAGgCCGUCAgcGCCCGguCCAgcagggccguauccuCGUGCa -3'
miRNA:   3'- -UCAUCgGGUAGUa-CGGGU--GGU---------------GCAUG- -5'
14615 5' -54.7 NC_003521.1 + 85333 0.67 0.960495
Target:  5'- -uUGGCCCG-CG-GCCCGCCGCa--- -3'
miRNA:   3'- ucAUCGGGUaGUaCGGGUGGUGcaug -5'
14615 5' -54.7 NC_003521.1 + 88597 0.77 0.489611
Target:  5'- --gAGCCCAU--UGCCCacaGCCACGUGCg -3'
miRNA:   3'- ucaUCGGGUAguACGGG---UGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 90822 0.7 0.852658
Target:  5'- aGGUGGCgUCGUCGUGCggcgggugcgcgCCGCC-CGUGCu -3'
miRNA:   3'- -UCAUCG-GGUAGUACG------------GGUGGuGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 91521 0.68 0.93538
Target:  5'- cGGcGGCCgCGUCGUcgcGCuCCAgCACGUACu -3'
miRNA:   3'- -UCaUCGG-GUAGUA---CG-GGUgGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 100954 0.68 0.919705
Target:  5'- cGUAGUCCAgacagaagcgcCGUGCCCGgCGCGcACg -3'
miRNA:   3'- uCAUCGGGUa----------GUACGGGUgGUGCaUG- -5'
14615 5' -54.7 NC_003521.1 + 101878 0.67 0.956871
Target:  5'- aAGUAGCCguCGUCcugGUCCAUCuuGUACa -3'
miRNA:   3'- -UCAUCGG--GUAGua-CGGGUGGugCAUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.