miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 5' -54.7 NC_003521.1 + 722 0.69 0.888938
Target:  5'- ---cGCCCAccccaaCGUGCacaaccCCACCACGUGCa -3'
miRNA:   3'- ucauCGGGUa-----GUACG------GGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 3120 0.68 0.925164
Target:  5'- --cAGCCCGUgugCAUGCCUGCCccgguacCGUACu -3'
miRNA:   3'- ucaUCGGGUA---GUACGGGUGGu------GCAUG- -5'
14615 5' -54.7 NC_003521.1 + 15749 0.66 0.963903
Target:  5'- aGGUGcGCCCGggcagcagCAUGCCCgaGCUACGcgACc -3'
miRNA:   3'- -UCAU-CGGGUa-------GUACGGG--UGGUGCa-UG- -5'
14615 5' -54.7 NC_003521.1 + 15817 0.66 0.972882
Target:  5'- gAGcGGCUCAUCGUGCUgGgCAaGUGCg -3'
miRNA:   3'- -UCaUCGGGUAGUACGGgUgGUgCAUG- -5'
14615 5' -54.7 NC_003521.1 + 17028 0.71 0.828499
Target:  5'- --aGGCCCGUCGUcuggcgGCCCACgGCGguaacgGCg -3'
miRNA:   3'- ucaUCGGGUAGUA------CGGGUGgUGCa-----UG- -5'
14615 5' -54.7 NC_003521.1 + 18310 0.67 0.953027
Target:  5'- -aUGGaCCCuUCGUGCCCAgCgGCGUGg -3'
miRNA:   3'- ucAUC-GGGuAGUACGGGU-GgUGCAUg -5'
14615 5' -54.7 NC_003521.1 + 21537 0.67 0.953027
Target:  5'- -cUGGCCU-UCAUggGCCCGCuCAUGUGCc -3'
miRNA:   3'- ucAUCGGGuAGUA--CGGGUG-GUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 28310 0.66 0.974721
Target:  5'- --gAGCCuCAUCAUccagGCCUacguggucucgucgGCCAUGUGCg -3'
miRNA:   3'- ucaUCGG-GUAGUA----CGGG--------------UGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 29100 0.67 0.944663
Target:  5'- uGgcGUCCAgugCGUGaUCCGCCACGgcgGCa -3'
miRNA:   3'- uCauCGGGUa--GUAC-GGGUGGUGCa--UG- -5'
14615 5' -54.7 NC_003521.1 + 31221 0.71 0.820086
Target:  5'- cAGuUAGCCUGUUGUGUuuaccuCCGCUACGUGCg -3'
miRNA:   3'- -UC-AUCGGGUAGUACG------GGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 33160 0.66 0.972882
Target:  5'- -uUGGCCuCGUCG-GCCUcgGCCACGUuccACg -3'
miRNA:   3'- ucAUCGG-GUAGUaCGGG--UGGUGCA---UG- -5'
14615 5' -54.7 NC_003521.1 + 34193 0.7 0.836736
Target:  5'- --cAGCUUAUCGUgGCCCACCAgGgcgGCg -3'
miRNA:   3'- ucaUCGGGUAGUA-CGGGUGGUgCa--UG- -5'
14615 5' -54.7 NC_003521.1 + 35452 0.75 0.57757
Target:  5'- -aUAGUCCAUCAUGCCgCGCagguCGUGCa -3'
miRNA:   3'- ucAUCGGGUAGUACGG-GUGgu--GCAUG- -5'
14615 5' -54.7 NC_003521.1 + 36730 0.67 0.944663
Target:  5'- cAGUGGCgCCAcCAggugcacgugGCCCACgACGUGu -3'
miRNA:   3'- -UCAUCG-GGUaGUa---------CGGGUGgUGCAUg -5'
14615 5' -54.7 NC_003521.1 + 41114 0.67 0.944663
Target:  5'- uGGU-GCUgGUCAcccaguugcUGUCCaACCACGUGCa -3'
miRNA:   3'- -UCAuCGGgUAGU---------ACGGG-UGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 43341 0.71 0.802767
Target:  5'- ---cGCgCCGUCcgGCCCGCCGCGc-- -3'
miRNA:   3'- ucauCG-GGUAGuaCGGGUGGUGCaug -5'
14615 5' -54.7 NC_003521.1 + 44884 0.66 0.965206
Target:  5'- uGUGGCCCAcgcaggacggcuaugUCcaGUGCCCGCgagcaGCGUGa -3'
miRNA:   3'- uCAUCGGGU---------------AG--UACGGGUGg----UGCAUg -5'
14615 5' -54.7 NC_003521.1 + 45417 0.66 0.970091
Target:  5'- aGGUAGCCg---GUGCCCGCCGuCG-GCg -3'
miRNA:   3'- -UCAUCGGguagUACGGGUGGU-GCaUG- -5'
14615 5' -54.7 NC_003521.1 + 46584 0.72 0.756971
Target:  5'- cGGUAGCCCuUCuUGCCCAUgACGc-- -3'
miRNA:   3'- -UCAUCGGGuAGuACGGGUGgUGCaug -5'
14615 5' -54.7 NC_003521.1 + 47515 0.66 0.97548
Target:  5'- ----cCCCAcCGUGCCCACCACc--- -3'
miRNA:   3'- ucaucGGGUaGUACGGGUGGUGcaug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.