miRNA display CGI


Results 1 - 20 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14615 5' -54.7 NC_003521.1 + 211383 0.69 0.901931
Target:  5'- uAGUAGgCCGUCAggcGCCgGCUcuCGUGCa -3'
miRNA:   3'- -UCAUCgGGUAGUa--CGGgUGGu-GCAUG- -5'
14615 5' -54.7 NC_003521.1 + 34193 0.7 0.836736
Target:  5'- --cAGCUUAUCGUgGCCCACCAgGgcgGCg -3'
miRNA:   3'- ucaUCGGGUAGUA-CGGGUGGUgCa--UG- -5'
14615 5' -54.7 NC_003521.1 + 151804 0.7 0.844792
Target:  5'- aGGUGGCCgGcaCGUGuUCCACCACGUccGCg -3'
miRNA:   3'- -UCAUCGGgUa-GUAC-GGGUGGUGCA--UG- -5'
14615 5' -54.7 NC_003521.1 + 226604 0.7 0.852658
Target:  5'- cGUAGCCCAgcggcgUCAgggGCUCGCCGCa--- -3'
miRNA:   3'- uCAUCGGGU------AGUa--CGGGUGGUGcaug -5'
14615 5' -54.7 NC_003521.1 + 146623 0.7 0.867797
Target:  5'- --gAGCCCGUCGUcgucuucaaggGCCCcgGCCACG-ACg -3'
miRNA:   3'- ucaUCGGGUAGUA-----------CGGG--UGGUGCaUG- -5'
14615 5' -54.7 NC_003521.1 + 153084 0.69 0.888938
Target:  5'- --gGGCCCGggcCGggGCCCACCACGc-- -3'
miRNA:   3'- ucaUCGGGUa--GUa-CGGGUGGUGCaug -5'
14615 5' -54.7 NC_003521.1 + 200949 0.69 0.888938
Target:  5'- ---cGCCCAccccaaCGUGCacaaccCCACCACGUGCa -3'
miRNA:   3'- ucauCGGGUa-----GUACG------GGUGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 75917 0.69 0.895547
Target:  5'- --gGGCaCGUUGUGCUCGCgCACGUACg -3'
miRNA:   3'- ucaUCGgGUAGUACGGGUG-GUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 78320 0.69 0.901931
Target:  5'- uGUAGCCgGUCAUGaaagaCGgCGCGUACc -3'
miRNA:   3'- uCAUCGGgUAGUACgg---GUgGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 153738 0.71 0.828499
Target:  5'- ---uGCCCAcCGUgGCCCACCaauccACGUACa -3'
miRNA:   3'- ucauCGGGUaGUA-CGGGUGG-----UGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 114511 0.71 0.828499
Target:  5'- cGUGGCCgc-CGUGCCCACCGCc--- -3'
miRNA:   3'- uCAUCGGguaGUACGGGUGGUGcaug -5'
14615 5' -54.7 NC_003521.1 + 120080 0.71 0.820086
Target:  5'- --aGGUCCGUCAgGUCCACCGuguCGUGCu -3'
miRNA:   3'- ucaUCGGGUAGUaCGGGUGGU---GCAUG- -5'
14615 5' -54.7 NC_003521.1 + 88597 0.77 0.489611
Target:  5'- --gAGCCCAU--UGCCCacaGCCACGUGCg -3'
miRNA:   3'- ucaUCGGGUAguACGGG---UGGUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 127853 0.77 0.50772
Target:  5'- --cAGCCCGUCGggcagguUGCCCACCaggaugcgcgGCGUGCa -3'
miRNA:   3'- ucaUCGGGUAGU-------ACGGGUGG----------UGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 35452 0.75 0.57757
Target:  5'- -aUAGUCCAUCAUGCCgCGCagguCGUGCa -3'
miRNA:   3'- ucAUCGGGUAGUACGG-GUGgu--GCAUG- -5'
14615 5' -54.7 NC_003521.1 + 109763 0.74 0.648279
Target:  5'- -cUGGCCCAgcugcugCAUGCCCACUugGggaugGCu -3'
miRNA:   3'- ucAUCGGGUa------GUACGGGUGGugCa----UG- -5'
14615 5' -54.7 NC_003521.1 + 226091 0.72 0.737834
Target:  5'- --cGGCCCGUCAcGCCCaacagauaccACgGCGUGCa -3'
miRNA:   3'- ucaUCGGGUAGUaCGGG----------UGgUGCAUG- -5'
14615 5' -54.7 NC_003521.1 + 46584 0.72 0.756971
Target:  5'- cGGUAGCCCuUCuUGCCCAUgACGc-- -3'
miRNA:   3'- -UCAUCGGGuAGuACGGGUGgUGCaug -5'
14615 5' -54.7 NC_003521.1 + 148296 0.71 0.810639
Target:  5'- gGGUAGCCCAggUCGggaaaguUGCUcagCACCAgGUGCa -3'
miRNA:   3'- -UCAUCGGGU--AGU-------ACGG---GUGGUgCAUG- -5'
14615 5' -54.7 NC_003521.1 + 217503 0.71 0.810639
Target:  5'- aGGUGGCCUG-CAUGgCCAcggugcuguagacCCGCGUGCa -3'
miRNA:   3'- -UCAUCGGGUaGUACgGGU-------------GGUGCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.